CN189847

Overview
NameCN189847
Unique NameCN189847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ARP5_AEDAE (Actin-related protein 5 OS=Aedes aegypti GN=Arp5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 1
Query:   43 IGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 393
            IG ER R PE+LFQPS+IG++ AG+  T    +     + +  L GN++L+GG     G  +R+S+E+ A+ P      ++         W G S  A+   F+Q  I++  YDE G
Sbjct:  510 IGVERIRVPEILFQPSMIGVQEAGLTGTIDYVLKLFPKEDQVKLVGNVMLTGGCANIRGFKERLSRELQAILPFQSVYNLMVAGSPSLDAWRGASQFANSQEFKQSLITRQLYDECG 626          
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ARP6_CAEEL (Actin-like protein C08B11.6 OS=Caenorhabditis elegans GN=C08B11.6 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.372e-13
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   37 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKV---VAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 402
            I +G ERF  PE+LF PS I ++  G+ E    SI +C   +R  L  NI++ GGS+ FPG  +R+ +E+ ++ P+   + V   V  P+     W  G  L  L+  +  WI++ ++DE G S+
Sbjct:  263 IHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVPWINRKDWDERGDSL 383          
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ARP3_ARATH (Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   43 IGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 402
            +G ERF  PEV F P +   +    +       I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++++VW GGS+L+S   F     +K EY+E G SI
Sbjct:  280 VGYERFLGPEVFFNPEIYSNDFTTTLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDLKKIVDARVLANNARTGGEITSQPVEVNVVSHPVQRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416          
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ARP5_SCHPO (Actin-like protein arp5 OS=Schizosaccharomyces pombe GN=arp5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 34/121 (28.10%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   43 IGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 405
            +  E+ R PEV+F PS++G++ AGI E   + + +  ++ ++ L  N++++GG    PG+  R+ +E+T++ P    I V          W G S  +    F+   +++ EY E GP  +
Sbjct:  591 LNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711          
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ARP4_CANAL (Actin-related protein 4 OS=Candida albicans GN=ARP4 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  112 GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 393
            GI +   +++   D+D+R  L  NI+++GG ++   + +R+  E++   P  +KI++ A     ER    WIGGS+LASL TF QMW++K EY+E G
Sbjct:  364 GISQLISHTLSNIDIDLRASLANNIIVTGGVSLISQLTERLYLELSNNNPG-LKIRLHAVGNSTERINQAWIGGSVLASLGTFHQMWVTKEEYNEVG 459          
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ARP8_ARATH (Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   40 TIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCD---VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMK--IKVVAPPERKYSVWIGGSILASLSTFQQMW 363
            T+  ERF+  E+LFQP L GM A  +H+     +  CD   +      +  +VL+GGS   PG+++R+ +E+    PSS+   I+V+ PP    + W G  ++++LS F   W
Sbjct:  344 TLSKERFQTGEILFQPRLAGMRAMSLHQAVSLCMDHCDAAGLTGDDSWFKTVVLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFPGPW 456          
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ARP5_DROME (Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 40/129 (31.01%), Postives = 62/129 (48.06%), Query Frame = 1
Query:    7 KNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 393
            +NY+L        G E  R PEVLFQPS+IG   AG+ E     +       ++ L  ++ L+GG   F G+ +R+ KE+  + P   K  +    E   S W+G  + A   TF Q   ++ ++ E G
Sbjct:  507 ENYQLH------FGVENIRVPEVLFQPSMIGCSEAGLAELIAFVLKLFPAAEQQRLVEHVYLTGGCAQFKGLKERLIKELMEMRPFQSKFAIYESDEPTLSAWLGACVHAGEPTFGQTLTTRQDHQEHG 629          
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ARP5_YEAST (Actin-related protein 5 OS=Saccharomyces cerevisiae GN=ARP5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 41/131 (31.30%), Postives = 67/131 (51.15%), Query Frame = 1
Query:   43 IGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMK---------CDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA-SLSTFQQMWISKGEYDESGPSIV 405
            +  ER R PEV+FQP++ G + AGI E +   ++K             I  D+  N++++GG+   PG+ +R+ KE T   P+   I V    +     W G + LA +   +++  ISK EY+E GP  +
Sbjct:  614 LNVERIRVPEVIFQPTMGGQDQAGICELSETILLKKFGSQPGKLSQTSI--DMVNNVLITGGNAKVPGLKERIVKEFTGFLPTGTNITVNMSSDPSLDAWKGMAALARNEEQYRKTVISKKEYEEYGPEYI 742          
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 37/129 (28.68%), Postives = 62/129 (48.06%), Query Frame = 1
Query:    7 KNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 393
            +NY+L        G E  R PE+LFQPS+IG   AG+ E     +       ++ +  ++ L+GG   F G+ +R+++E   + P   K  +    +   S W+G  + AS   F Q   ++ +Y E G
Sbjct:  510 ENYQLH------FGVEDIRVPEILFQPSMIGSPEAGLAELIAFVLKLFTAQEQQRMVEHVYLTGGCAQFRGLKERLAREFLEMRPFQSKFSIYESDDHTLSAWLGACVQASQPNFGQTLTTRKDYQEHG 632          
The following BLAST results are available for this feature:
BLAST of CN189847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ARP5_AEDAE2.582e-1334.19Actin-related protein 5 OS=Aedes aegypti GN=Arp5 P... [more]
ARP6_CAEEL3.372e-1334.40Actin-like protein C08B11.6 OS=Caenorhabditis eleg... [more]
ARP3_ARATH5.751e-1332.12Actin-related protein 3 OS=Arabidopsis thaliana GN... [more]
ARP5_SCHPO2.185e-1228.10Actin-like protein arp5 OS=Schizosaccharomyces pom... [more]
ARP4_CANAL3.728e-1238.14Actin-related protein 4 OS=Candida albicans GN=ARP... [more]
ARP8_ARATH4.869e-1233.63Actin-related protein 8 OS=Arabidopsis thaliana GN... [more]
ARP5_DROME1.417e-1131.01Actin-related protein 5 OS=Drosophila melanogaster... [more]
ARP5_YEAST1.850e-1131.30Actin-related protein 5 OS=Saccharomyces cerevisia... [more]
ARP5_DROPS1.850e-1128.68Actin-related protein 5 OS=Drosophila pseudoobscur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189847 ID=CN189847; Name=CN189847; organism=Citrus sinensis; type=EST; length=736bp
GAGGAGAAGAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGC
TGAAAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAA
TGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGAAGTGT
GATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGG
TTCAACTATGTTCCCTGGTATTGCCGACCGTATGAGCAAGGAAATCACAG
CACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGA
AAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTT
CCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCA
TTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTT
CTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGT
TGGTTGACATGGAGAAGTGCTAAGGATGGGGCCATTGAAGGAGGCATATC
TCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTGAGGGGGGCTT
ATTTCTGTACTCAACCATCTTCCTTGCCTTGCATTCATCTGGTGTTCAAC
CAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTATTTTAAGTAGGATGTTT
GTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCT
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