CN189847

Overview
NameCN189847
Unique NameCN189847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT1_DROME (Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 SV=4)

HSP 1 Score: 260.766 bits (665), Expect = 5.659e-69
Identity = 123/139 (88.49%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT_PUCGR (Actin OS=Puccinia graminis PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.390e-69
Identity = 121/139 (87.05%), Postives = 134/139 (96.40%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPSL+G+EA+GIHETTYNSIMKCD+DIRKDLYGN+V+SGG+TM+ GI+DRM KEITALAPSSMK+K+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  237 EKSYELPDGQVITIGNERFRCPEALFQPSLLGLEASGIHETTYNSIMKCDLDIRKDLYGNVVMSGGTTMYSGISDRMQKEITALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTC_BIOPF (Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.390e-69
Identity = 123/139 (88.49%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE +FQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEAVFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT2_DROME (Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3)

HSP 1 Score: 260.381 bits (664), Expect = 7.390e-69
Identity = 124/139 (89.21%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPESLFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69
Identity = 125/139 (89.93%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK YELPDGQ ITIG ERFRCPEVL+ PSLIGMEA GIH+TT+NSIMKCDVDIRKDLY NIVLSGG+TMFPGIADRM+KEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  239 EKTYELPDGQPITIGNERFRCPEVLYNPSLIGMEAVGIHDTTFNSIMKCDVDIRKDLYNNIVLSGGTTMFPGIADRMTKEITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTM_LYTPI (Actin, muscle (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQP+ IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIADRM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:   34 EKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 172
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTM_HELTB (Actin, cytoskeletal OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQP+ IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIADRM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTM_HELER (Actin, cytoskeletal OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQP+ IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIADRM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTB3_TAKRU (Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME++GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  237 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT3A_HELAM (Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69
Identity = 123/139 (88.49%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CN189847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT1_DROME5.659e-6988.49Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 ... [more]
ACT_PUCGR7.390e-6987.05Actin OS=Puccinia graminis PE=3 SV=1[more]
ACTC_BIOPF7.390e-6988.49Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 ... [more]
ACT2_DROME7.390e-6989.21Actin-42A OS=Drosophila melanogaster GN=Act42A PE=... [more]
ACT_VOLCA9.652e-6989.93Actin OS=Volvox carteri PE=3 SV=1[more]
ACTM_LYTPI9.652e-6987.77Actin, muscle (Fragment) OS=Lytechinus pictus PE=3... [more]
ACTM_HELTB9.652e-6987.77Actin, cytoskeletal OS=Heliocidaris tuberculata PE... [more]
ACTM_HELER9.652e-6987.77Actin, cytoskeletal OS=Heliocidaris erythrogramma ... [more]
ACTB3_TAKRU9.652e-6987.77Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc... [more]
ACT3A_HELAM9.652e-6988.49Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189847 ID=CN189847; Name=CN189847; organism=Citrus sinensis; type=EST; length=736bp
GAGGAGAAGAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGC
TGAAAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAA
TGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGAAGTGT
GATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGG
TTCAACTATGTTCCCTGGTATTGCCGACCGTATGAGCAAGGAAATCACAG
CACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGA
AAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTT
CCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCA
TTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTT
CTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGT
TGGTTGACATGGAGAAGTGCTAAGGATGGGGCCATTGAAGGAGGCATATC
TCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTGAGGGGGGCTT
ATTTCTGTACTCAACCATCTTCCTTGCCTTGCATTCATCTGGTGTTCAAC
CAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTATTTTAAGTAGGATGTTT
GTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCT
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