CN189847

Overview
NameCN189847
Unique NameCN189847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTB_OREMO (Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN=actb PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  237 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTB1_TAKRU (Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  237 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTA_RAT (Actin, aortic smooth muscle OS=Rattus norvegicus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  239 EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTA_RABIT (Actin, aortic smooth muscle OS=Oryctolagus cuniculus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  239 EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTA_MOUSE (Actin, aortic smooth muscle OS=Mus musculus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  239 EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTA_HUMAN (Actin, aortic smooth muscle OS=Homo sapiens GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  239 EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTA_CHICK (Actin, aortic smooth muscle OS=Gallus gallus GN=ACTA2 PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  239 EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTA_BOVIN (Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  239 EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 121/139 (87.05%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME++GIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESSGIHETTYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CN189847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACTB_OREMO1.261e-6887.77Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN... [more]
ACTB1_TAKRU1.261e-6887.77Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba... [more]
ACTA_RAT1.261e-6887.77Actin, aortic smooth muscle OS=Rattus norvegicus G... [more]
ACTA_RABIT1.261e-6887.77Actin, aortic smooth muscle OS=Oryctolagus cunicul... [more]
ACTA_MOUSE1.261e-6887.77Actin, aortic smooth muscle OS=Mus musculus GN=Act... [more]
ACTA_HUMAN1.261e-6887.77Actin, aortic smooth muscle OS=Homo sapiens GN=ACT... [more]
ACTA_CHICK1.261e-6887.77Actin, aortic smooth muscle OS=Gallus gallus GN=AC... [more]
ACTA_BOVIN1.261e-6887.77Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2... [more]
ACT4_ARTSX1.261e-6887.77Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]
ACT3_LIMPO1.261e-6887.05Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189847 ID=CN189847; Name=CN189847; organism=Citrus sinensis; type=EST; length=736bp
GAGGAGAAGAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGC
TGAAAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAA
TGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGAAGTGT
GATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGG
TTCAACTATGTTCCCTGGTATTGCCGACCGTATGAGCAAGGAAATCACAG
CACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGA
AAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTT
CCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCA
TTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTT
CTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGT
TGGTTGACATGGAGAAGTGCTAAGGATGGGGCCATTGAAGGAGGCATATC
TCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTGAGGGGGGCTT
ATTTCTGTACTCAACCATCTTCCTTGCCTTGCATTCATCTGGTGTTCAAC
CAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTATTTTAAGTAGGATGTTT
GTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCT
back to top