CN189847

Overview
NameCN189847
Unique NameCN189847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT2_HALRO (Actin, muscle 2/4/4A OS=Halocynthia roretzi GN=MA2 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  240 EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 378
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT1_SCHMA (Actin-1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 123/139 (88.49%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEA+GIHETTYNSIMKCDVDIRKDLY N VLSGGSTM+PGIADRM KEI+ALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT1_HALRO (Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGGSTM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  240 EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 378
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTC_HALRO (Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.646e-68
Identity = 122/139 (87.77%), Postives = 130/139 (93.53%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+IT+G ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEI ALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIVALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTC_BRALA (Actin, cytoplasmic OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.646e-68
Identity = 121/139 (87.05%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ G+HETTYNSIMKCD+DIRKDLY N VLSGG+TMFPGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  237 EKSYELPDGQVITIGNERFRCPESLFQPSFLGMESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTC_BRAFL (Actin, cytoplasmic OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.646e-68
Identity = 121/139 (87.05%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ G+HETTYNSIMKCD+DIRKDLY N VLSGG+TMFPGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  237 EKSYELPDGQVITIGNERFRCPESLFQPSFLGMESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTC_BRABE (Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.646e-68
Identity = 121/139 (87.05%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ G+HETTYNSIMKCD+DIRKDLY N VLSGG+TMFPGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  237 EKSYELPDGQVITIGNERFRCPESLFQPSFLGMESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT2_SCHMA (Actin-2 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.646e-68
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AG+HETT+NSIMKCDVDIRKDLY N VLSGG+TMFPGIADRM KEITALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGVHETTFNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT1_LYTPI (Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.646e-68
Identity = 123/139 (88.49%), Postives = 130/139 (93.53%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHET YNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETCYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT_CRAGI (Actin OS=Crassostrea gigas PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.150e-68
Identity = 121/139 (87.05%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE +FQPS +GME++GIHET+YNSIMKCDVDIRKDLY NIVLSGG+TMFPGIADRM KE+TALAP +MKIKV+APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESSGIHETSYNSIMKCDVDIRKDLYANIVLSGGTTMFPGIADRMQKEVTALAPPTMKIKVIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CN189847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT2_HALRO1.261e-6887.77Actin, muscle 2/4/4A OS=Halocynthia roretzi GN=MA2... [more]
ACT1_SCHMA1.261e-6888.49Actin-1 OS=Schistosoma mansoni PE=2 SV=1[more]
ACT1_HALRO1.261e-6887.77Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE... [more]
ACTC_HALRO1.646e-6887.77Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=... [more]
ACTC_BRALA1.646e-6887.05Actin, cytoplasmic OS=Branchiostoma lanceolatum PE... [more]
ACTC_BRAFL1.646e-6887.05Actin, cytoplasmic OS=Branchiostoma floridae PE=2 ... [more]
ACTC_BRABE1.646e-6887.05Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 ... [more]
ACT2_SCHMA1.646e-6887.77Actin-2 OS=Schistosoma mansoni PE=2 SV=1[more]
ACT1_LYTPI1.646e-6888.49Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV... [more]
ACT_CRAGI2.150e-6887.05Actin OS=Crassostrea gigas PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189847 ID=CN189847; Name=CN189847; organism=Citrus sinensis; type=EST; length=736bp
GAGGAGAAGAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGC
TGAAAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAA
TGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGAAGTGT
GATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGG
TTCAACTATGTTCCCTGGTATTGCCGACCGTATGAGCAAGGAAATCACAG
CACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGA
AAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTT
CCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCA
TTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTT
CTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGT
TGGTTGACATGGAGAAGTGCTAAGGATGGGGCCATTGAAGGAGGCATATC
TCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTGAGGGGGGCTT
ATTTCTGTACTCAACCATCTTCCTTGCCTTGCATTCATCTGGTGTTCAAC
CAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTATTTTAAGTAGGATGTTT
GTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCT
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