CN189843

Overview
NameCN189843
Unique NameCN189843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length479
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS27A_KLULA (40S ribosomal protein S27a OS=Kluyveromyces lactis GN=ubi3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.126e-14
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 303
            LAVL +YKVDD GKV +LRKECPN  CG G F+ANH DR YCGKC  T+  QK
Sbjct:   24 LAVLNYYKVDDEGKVAKLRKECPN--CGPGIFLANHGDRFYCGKCHSTFATQK 74          
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS27A_PLUXY (40S ribosomal protein S27a OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.735e-14
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 300
            LAVL+FYKVD++GK+ RLR+EC + +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTSEQCGAGVFMAVMEDRHYCGKCHRTMVFK 75          
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS27A_SPOFR (40S ribosomal protein S27a OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.185e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 300
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS27A_MANSE (40S ribosomal protein S27a OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.185e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 300
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS27B_SCHPO (40S ribosomal protein S27b OS=Schizosaccharomyces pombe GN=ubi5 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.799e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 288
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS27A_SCHPO (40S ribosomal protein S27a OS=Schizosaccharomyces pombe GN=ubi3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.799e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 288
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS27A_CAEBR (40S ribosomal protein S27a OS=Caenorhabditis briggsae GN=ubl-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.350e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 306
            LAVL++YKVD++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKVDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS27A_CAEEL (40S ribosomal protein S27a OS=Caenorhabditis elegans GN=ubl-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.069e-13
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 306
            LAVL++YK+D++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.838e-13
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTY 291
            LAVL +YKVD  GKV +LR+EC N  CGAG F+ANH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72          
BLAST of CN189843 vs. ExPASy Swiss-Prot
Match: RS27A_DICDI (40S ribosomal protein S27a OS=Dictyostelium discoideum GN=ubqC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:  145 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 294
            LAVL++YK D++GK++R+ +ECP   CGAG FMA H +R YCGKC  T V
Sbjct:   25 LAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKCHSTLV 74          
The following BLAST results are available for this feature:
BLAST of CN189843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RS27A_KLULA2.126e-1467.9240S ribosomal protein S27a OS=Kluyveromyces lactis... [more]
RS27A_PLUXY4.735e-1463.4640S ribosomal protein S27a OS=Plutella xylostella ... [more]
RS27A_SPOFR6.185e-1463.4640S ribosomal protein S27a OS=Spodoptera frugiperd... [more]
RS27A_MANSE6.185e-1463.4640S ribosomal protein S27a OS=Manduca sexta PE=3 S... [more]
RS27B_SCHPO1.799e-1370.8340S ribosomal protein S27b OS=Schizosaccharomyces ... [more]
RS27A_SCHPO1.799e-1370.8340S ribosomal protein S27a OS=Schizosaccharomyces ... [more]
RS27A_CAEBR2.350e-1359.2640S ribosomal protein S27a OS=Caenorhabditis brigg... [more]
RS27A_CAEEL3.069e-1357.4140S ribosomal protein S27a OS=Caenorhabditis elega... [more]
RS37_YEAST6.838e-1365.3140S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RS27A_DICDI5.789e-1258.0040S ribosomal protein S27a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189843 ID=CN189843; Name=CN189843; organism=Citrus sinensis; type=EST; length=479bp
GAGGGCAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACACTCCA
CCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCT
ACACCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCC
GTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAG
GAAGGAGTGTCCGAATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACC
ACTTTGACAGGCACTACTGCGGCAAGTGTGGACTCACCTATGTTTACCAG
AAGGCTGGCGGTGATTGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAA
TTAGTATTAATTACTATGGTTTTTGTGGTTCAAAAATTATGACTCTTTCG
TAATTTTGTTTGACTATATACTTGTTTGCTGGAGCGTTTTAATTAAATGG
TTATCTGTTTTAAATTTTAAAAAAAAAAA
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