CN189837
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_YEAST (60S ribosomal protein L40 OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 9.635e-19 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1 Query: 253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 IIEPSL ALA KYN DK +CRKCYARL PRA NCRK+KCGH+N LRPKKK+K Sbjct: 1 IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18 Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1 Query: 25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252 M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP QR+++ GKQL D T YN+++ S LHLVL LRGG Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 6.245e-18 Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1 Query: 25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 255 M I VKTLTGK I ++++ +D I +K ++++KEGIPP QQRLIF GKQ+ D + ++Y+I+ S LHLVL LRGG+ Sbjct: 1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17 Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1 Query: 25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252 M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++ S LHLVL LRGG Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.373e-17 Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1 Query: 253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 IIEPSL ALA KYN +K ICRKCYARL PRA NCRK+KCGHS+ +RPKK +K Sbjct: 1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.373e-17 Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 Query: 253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 IIEPSL LA+KYN DK ICRKCYARL PRA NCRKKKCGHS+ LR KKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.287e-17 Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 1 Query: 253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 IIEPSL LA KYN +K ICRKCYARL PRA NCRKKKCGH++ LRPKKK K Sbjct: 1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16 Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1 Query: 25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252 M + VKTLTGK I++E++ SD + ++K +++KEGIPP QQRLIF GKQ++D T+ D ++ + LHLVL LRGG Sbjct: 1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_TOBAC (60S ribosomal protein L40 OS=Nicotiana tabacum PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16 Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 1 Query: 253 IIEPSLMALARKYNQDKMICRKCY--------------------ARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 IIEPSL ALA K+N DKMICRKCY ARL PRA NCRK+KCGH+NH+RPKKK+K Sbjct: 1 IIEPSLKALASKFNCDKMICRKCYVRCPRRTPQRTCRVLTWIPQARLPPRATNCRKRKCGHTNHVRPKKKLK 72
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-14 Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1 Query: 256 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 +EP++ ALA+KYN +K +CR CYARL P+A NCRK+KCGHSN LR KKK K Sbjct: 2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52 The following BLAST results are available for this feature:
BLAST of CN189837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 125
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189837 ID=CN189837; Name=CN189837; organism=Citrus sinensis; type=EST; length=460bpback to top |