CN189837

Overview
NameCN189837
Unique NameCN189837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_YEAST (60S ribosomal protein L40 OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.635e-19
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL ALA KYN DK +CRKCYARL PRA NCRK+KCGH+N LRPKKK+K
Sbjct:    1 IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 6.245e-18
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 255
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.373e-17
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL ALA KYN +K ICRKCYARL PRA NCRK+KCGHS+ +RPKK +K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.373e-17
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DK ICRKCYARL PRA NCRKKKCGHS+ LR KKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.287e-17
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA KYN +K ICRKCYARL PRA NCRKKKCGH++ LRPKKK K
Sbjct:    1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_TOBAC (60S ribosomal protein L40 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCY--------------------ARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL ALA K+N DKMICRKCY                    ARL PRA NCRK+KCGH+NH+RPKKK+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYVRCPRRTPQRTCRVLTWIPQARLPPRATNCRKRKCGHTNHVRPKKKLK 72          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-14
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1
Query:  256 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            +EP++ ALA+KYN +K +CR CYARL P+A NCRK+KCGHSN LR KKK K
Sbjct:    2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52          
The following BLAST results are available for this feature:
BLAST of CN189837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RL40_YEAST9.635e-1978.8560S ribosomal protein L40 OS=Saccharomyces cerevis... [more]
RUB3_ARATH4.782e-1855.26NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI6.245e-1853.25NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO1.817e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RL40_CRYNE2.373e-1775.0060S ribosomal protein L40 OS=Cryptococcus neoforma... [more]
RL40_CAEEL2.373e-1778.8560S ribosomal protein L40 OS=Caenorhabditis elegan... [more]
RL40_EIMBO5.287e-1776.9260S ribosomal protein L40 OS=Eimeria bovis PE=2 SV... [more]
RUB1_YEAST4.476e-1652.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
RL40_TOBAC4.476e-1658.3360S ribosomal protein L40 OS=Nicotiana tabacum PE=... [more]
RL40_TETPY1.102e-1466.6760S ribosomal protein L40 OS=Tetrahymena pyriformi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189837 ID=CN189837; Name=CN189837; organism=Citrus sinensis; type=EST; length=460bp
CCTATGAGAAAAAGGGGGAAAAAAATGCAGATCTTCGTGAAAACCCTAAC
GGGGAAGACCATTACCCTCGAGGTCGAATCCAGCGACACCATCGACAATG
TCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGGACCAGCAGAGA
CTTATCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACTCTAGCCGATTA
CAATATCCAAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCGTGGCG
GTATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGAC
AAGATGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCCGTGAA
CTGCAGGAAGAAGAAATGTGGGCACAGCAACCATCTAAGGCCAAAGAAGA
AGATCAAGTAGATATTCTGCAGAGAAATGCTACATTTTATACTGAAACAG
GATGTTTTGC
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