CN189837

Overview
NameCN189837
Unique NameCN189837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.119e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1
Query:   25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.612e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 1
Query:   25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.341e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1
Query:   25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 8.694e-28
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1
Query:   25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.304e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   58 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 246
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.465e-24
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSN LRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 7.616e-24
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN LRPKKKIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.616e-24
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN LRPKKKIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.697e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSLMALARKYNQ KMICRKCYARLHPRAVNCRKKKCGHSN LRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.310e-22
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            +IEPSL  LARKYN DK++CRKCYARLHPRAVNCRKKKCGHSNH RPKKK+K
Sbjct:    1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52          
The following BLAST results are available for this feature:
BLAST of CN189837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
UBIQ_LEIMA8.119e-3493.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA2.612e-3290.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP1.341e-2880.26Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC8.694e-2876.32Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE3.304e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RL40_NICSY4.465e-2496.1560S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ7.616e-2496.1560S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH7.616e-2496.1560S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA1.697e-2396.1560S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_ACACA9.310e-2284.6260S ribosomal protein L40 OS=Acanthamoeba castella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189837 ID=CN189837; Name=CN189837; organism=Citrus sinensis; type=EST; length=460bp
CCTATGAGAAAAAGGGGGAAAAAAATGCAGATCTTCGTGAAAACCCTAAC
GGGGAAGACCATTACCCTCGAGGTCGAATCCAGCGACACCATCGACAATG
TCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGGACCAGCAGAGA
CTTATCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACTCTAGCCGATTA
CAATATCCAAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCGTGGCG
GTATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGAC
AAGATGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCCGTGAA
CTGCAGGAAGAAGAAATGTGGGCACAGCAACCATCTAAGGCCAAAGAAGA
AGATCAAGTAGATATTCTGCAGAGAAATGCTACATTTTATACTGAAACAG
GATGTTTTGC
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