CN189837

Overview
NameCN189837
Unique NameCN189837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.588e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL ALARKYNQ+KMICRKCYARLHPRA NCRKK CGH+N LRPKKK+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_MOUSE (60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_MACFA (60S ribosomal protein L40 OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_HUMAN (60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_FELCA (60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
The following BLAST results are available for this feature:
BLAST of CN189837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RL40_CHLRE1.588e-2186.5460S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]
RL40_SHEEP2.074e-2186.5460S ribosomal protein L40 OS=Ovis aries GN=UBA52 P... [more]
RL40_RAT2.074e-2186.5460S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB2.074e-2186.5460S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG2.074e-2186.5460S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA2.074e-2186.5460S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]
RL40_MOUSE2.074e-2186.5460S ribosomal protein L40 OS=Mus musculus GN=Uba52... [more]
RL40_MACFA2.074e-2186.5460S ribosomal protein L40 OS=Macaca fascicularis G... [more]
RL40_HUMAN2.074e-2186.5460S ribosomal protein L40 OS=Homo sapiens GN=UBA52... [more]
RL40_FELCA2.074e-2186.5460S ribosomal protein L40 OS=Felis catus GN=UBA52 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189837 ID=CN189837; Name=CN189837; organism=Citrus sinensis; type=EST; length=460bp
CCTATGAGAAAAAGGGGGAAAAAAATGCAGATCTTCGTGAAAACCCTAAC
GGGGAAGACCATTACCCTCGAGGTCGAATCCAGCGACACCATCGACAATG
TCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGGACCAGCAGAGA
CTTATCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACTCTAGCCGATTA
CAATATCCAAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCGTGGCG
GTATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGAC
AAGATGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCCGTGAA
CTGCAGGAAGAAGAAATGTGGGCACAGCAACCATCTAAGGCCAAAGAAGA
AGATCAAGTAGATATTCTGCAGAGAAATGCTACATTTTATACTGAAACAG
GATGTTTTGC
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