CN189837
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21 Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 Query: 253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21 Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 Query: 253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21 Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 Query: 253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 7.882e-21 Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 31 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252 I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 7.882e-21 Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 Query: 253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408 IIEPSL LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N+LRPKKK+K Sbjct: 1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20 Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 31 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252 I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20 Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 31 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252 I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20 Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 31 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252 I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.344e-20 Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 Query: 256 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKI 405 IEPSL+ LARKY DKMICRKCYARLHPRAVNCRKKKCGHSN+LRPKKK+ Sbjct: 1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.344e-20 Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1 Query: 25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252 M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q S LHLVL LRGG Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76 The following BLAST results are available for this feature:
BLAST of CN189837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 125
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189837 ID=CN189837; Name=CN189837; organism=Citrus sinensis; type=EST; length=460bpback to top |