CN189837

Overview
NameCN189837
Unique NameCN189837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.074e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.882e-21
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   31 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.882e-21
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1
Query:  253 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKIK 408
            IIEPSL  LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N+LRPKKK+K
Sbjct:    1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   31 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   31 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   31 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.344e-20
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:  256 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNHLRPKKKI 405
            IEPSL+ LARKY  DKMICRKCYARLHPRAVNCRKKKCGHSN+LRPKKK+
Sbjct:    1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50          
BLAST of CN189837 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.344e-20
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 252
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CN189837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RL40_CHICK2.074e-2186.5460S ribosomal protein L40 OS=Gallus gallus GN=UBA5... [more]
RL40_CANFA2.074e-2186.5460S ribosomal protein L40 OS=Canis familiaris GN=U... [more]
RL40_BOVIN2.074e-2186.5460S ribosomal protein L40 OS=Bos taurus GN=UBA52 P... [more]
RUB1_DESAN7.882e-2164.86NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RL40_DROME7.882e-2184.6260S ribosomal protein L40 OS=Drosophila melanogast... [more]
RUB2_ORYSJ1.029e-2063.51NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ1.029e-2063.51NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH1.029e-2063.51NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RL40_DICDI1.344e-2088.0060S ribosomal protein L40 OS=Dictyostelium discoid... [more]
NEDD8_DROME1.344e-2059.21NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189837 ID=CN189837; Name=CN189837; organism=Citrus sinensis; type=EST; length=460bp
CCTATGAGAAAAAGGGGGAAAAAAATGCAGATCTTCGTGAAAACCCTAAC
GGGGAAGACCATTACCCTCGAGGTCGAATCCAGCGACACCATCGACAATG
TCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGGACCAGCAGAGA
CTTATCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACTCTAGCCGATTA
CAATATCCAAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCGTGGCG
GTATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGAC
AAGATGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCCGTGAA
CTGCAGGAAGAAGAAATGTGGGCACAGCAACCATCTAAGGCCAAAGAAGA
AGATCAAGTAGATATTCTGCAGAGAAATGCTACATTTTATACTGAAACAG
GATGTTTTGC
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