CN189787

Overview
NameCN189787
Unique NameCN189787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 36/121 (29.75%), Postives = 65/121 (53.72%), Query Frame = -3
Query:  368 QFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMM--TSGEAVKYKSSLDAFSQILKNEGAKSLFKG 724
            ++NG+ D  +  ++ +G+AGLY+G   S +G+  Y  + F  Y++LK   +      +   S   G +    A   +YPID +RRR+ +    G+ + Y  + DAF +I+++EG   L+ G
Sbjct:  277 KYNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFGAISGATAQTLTYPIDLIRRRLQVQGIGGKDILYNGTFDAFRKIIRDEGVLGLYNG 397          
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = -3
Query:  347 QFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----TGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 724
            Q++G++D  RK L  +G+A  Y+G+  + +GII Y G+   +Y++LK   L            F   A G + +    LASYP+  VR RM    S E     +    F QIL+ EGA  L++G   N ++
Sbjct:  315 QYSGMLDCARKILAREGMAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASMEGAPEVTMSSLFKQILRTEGAFGLYRGLAPNFMK 445          
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = -3
Query:  347 QFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----TGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 724
            Q++G++D  R+ L  +G+A  Y+G+  + +GII Y G+   +Y++LK   L            F   A G + +    LASYP+  VR RM    S E     +    F QIL+ EGA  L++G   N ++
Sbjct:  315 QYSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKQILRTEGAFGLYRGLAPNFMK 445          
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 41/131 (31.30%), Postives = 66/131 (50.38%), Query Frame = -3
Query:  347 QFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----TGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 724
            Q++G++D  ++ L  +G+A  Y+G+  + +GII Y G+   +Y++LK   L            F   A G + +    LASYP+  VR RM    S E     +    F QIL+ EGA  L++G   N ++
Sbjct:  315 QYSGMLDCAKRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKQILRTEGAFGLYRGLAPNFMK 445          
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = -3
Query:  347 QFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----TGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMM-TSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 724
            Q+ G++D  +K L  +G++  Y+G+  + +GII Y G+   +Y++LK   L    T       F   A G + +    LASYP+  VR RM    S E     +    F  I+K EGA  L++G   N ++
Sbjct:  359 QYQGMLDCGKKILLKEGVSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAEASVEGAPQMTMSKLFKHIVKTEGAFGLYRGLAPNFMK 489          
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 42/131 (32.06%), Postives = 65/131 (49.62%), Query Frame = -3
Query:  347 QFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----TGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 724
            Q+ G+ D  +  LK++G++  Y+G+  + +GII Y G+   +Y++LK   L    T       F   A G + +    LASYP+  +R RM    S E     S    F QI+K EG   L++G   N L+
Sbjct:  315 QYKGISDCAKHILKTEGMSAFYKGYVPNMLGIIPYAGIDLAVYETLKNTWLQRYGTENADPGVFVLLACGTVSSTCGQLASYPLALIRTRMQAQASVEGSSQVSMTGLFKQIMKTEGPTGLYRGLTPNFLK 445          
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = -3
Query:  347 QFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----TGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 724
            Q++G++D  R+ L  +G+A  Y+G+  + +GII Y G+   +Y++LK   L            F   A G + +    LASYP+  VR RM    S E     +    F  IL+ EGA  L++G   N ++
Sbjct:  315 QYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKHILRTEGAFGLYRGLAPNFMK 445          
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 41/135 (30.37%), Postives = 67/135 (49.63%), Query Frame = -3
Query:  347 GERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWLITNGA------GLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 733
            G   ++G +D  +KT+  +G AGLY+G     VG+ +   + F  Y   K ++   KL D+   +  L  L   GA      G    P+D  + +M +  G+  +YKS+ D   QI K  G + +F+G GA ++R
Sbjct:   47 GNPIYSGTMDCLKKTISQEGFAGLYKGVASPLVGLSIMNSVMFLAYGQSKTLIQ--KLSDNPNEALDLKGLTAAGALAGIAIGFVDAPVDLFKSQMQVQQGDKNQYKSTADCAKQIWKVGGVRGVFQGLGATLVR 179          
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = -3
Query:  347 QFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----TGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMM-TSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 724
            Q+ G++D  +K L  +G++  Y+G+  + +GII Y G+   +Y++LK   L    T       F   A G + +    LASYP+  VR RM    S E     +    F  I+K EGA  L++G   N ++
Sbjct:  360 QYQGVLDCGKKILLQEGLSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTVSSTCGQLASYPLALVRTRMQAEASVEGAPQMTMSKLFKHIVKTEGAFGLYRGLAPNFMK 490          
BLAST of CN189787 vs. ExPASy Swiss-Prot
Match: MCFJ_DICDI (Mitochondrial substrate carrier family protein J OS=Dictyostelium discoideum GN=mcfJ PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 42/130 (32.31%), Postives = 63/130 (48.46%), Query Frame = -3
Query:  347 QFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKL---QDSFFASFALGWLITNGAGLASYPIDTVRRRMMMT-SGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 724
            Q+NG  D ++K ++ +G   LY+GF  S  G +  R +YFG Y+ +K   L G+     D  F +   G +    A +   P D   + + +  S    KYK   D F +I    G K L+KG GA I+R
Sbjct:   70 QYNGTFDGFKKLIRLEGKRALYKGFLTSECGYLCSRAIYFGSYEFVKQGFLKGRSDSDSDLLFVTTISGAISEALASVIWVPFDVATQSVQIQGSLSKPKYKGGSDVFKKIYGERGIKGLYKGFGATIIR 199          
The following BLAST results are available for this feature:
BLAST of CN189787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
MCFB_DICDI4.471e-1329.75Mitochondrial substrate carrier family protein B O... [more]
SCMC2_BOVIN4.943e-1232.82Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_MOUSE6.456e-1232.06Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_RAT1.438e-1131.30Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENTR2.453e-1131.30Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2A_DANRE2.453e-1132.06Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_HUMAN3.204e-1131.30Calcium-binding mitochondrial carrier protein SCaM... [more]
MCFG_DICDI4.185e-1130.37Mitochondrial substrate carrier family protein G O... [more]
SCMC2_XENLA5.465e-1131.30Calcium-binding mitochondrial carrier protein SCaM... [more]
MCFJ_DICDI7.138e-1132.31Mitochondrial substrate carrier family protein J O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189787 ID=CN189787; Name=CN189787; organism=Citrus sinensis; type=EST; length=744bp
GAGGTTTTTTTTTTTTTTTAACTGATCAGAAAAAATCACTAGTACATTGA
AAATATTTCCTCAAATCATGTCGAGCTGTGTAACTCGAGTGAATCAGGTT
TATGCAAAACAAAATTTCCATCCAAAACTAAATTGTTCAGGGGGTTCTTG
CTCCCCCCAAAAGAGTGAATTATTAAAGAAGACTCCTCTGCCGGAAAAAT
TCTCTGAGTATCAGATTTTCATCAATATCTAAAGCTAAAAAAACCAAAGG
GAATATGCCTTAGGCACCGCCAGAGCCATATTTCTTCCCAAAGACAATTA
ACTGCAATTTGTCATAACCAGCAAGCACACCGGCACCTGCAACAGCTCGG
AGGATGTTTGCTCCAGCACCCTTGAAGAGAGACTTAGCACCCTCATTCTT
CAGGATCTGAGAGAATGCATCAAGAGAGCTCTTGTACTTGACAGCCTCAC
CAGATGTCATCATCATCCTTCTACGGACAGTGTCAATTGGGTAGGAAGCA
AGACCAGCACCATTAGTGATGAGCCACCCAAGGGCGAAGCTAGCAAAGAA
ACTATCCTGCAACTTTCCAGTCAAGACCACTGGCTTCAGAGAATCATACA
TGCCAAAGTAAAGACCACGGTACACAATGATTCCAACACATGAAATGTTG
AAACCACGGTAAAGCCCAGCAATGCCATCAGATTTCAATGTCTTTCTGTA
GACATCAACCAGCCCATTGAATTGCCTCTCTCCTCCCTTCTTCG
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