CN189702

Overview
NameCN189702
Unique NameCN189702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189702 vs. ExPASy Swiss-Prot
Match: CATA_HELPY (Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 42/118 (35.59%), Postives = 59/118 (50.00%), Query Frame = -1
Query:  329 SNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCI--------IPKENNFKQPGERYRSWAPDRQER 658
            S D++LQ R+FSY DT R+RLG NY Q+PVN P+C  H++  DG+M   +     +Y PS   P    +     P+      EK              + + QPG+ YRS   D +ER
Sbjct:  327 SPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPSSL-PGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKER 443          
BLAST of CN189702 vs. ExPASy Swiss-Prot
Match: CATA_HELPJ (Catalase OS=Helicobacter pylori J99 GN=katA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 42/118 (35.59%), Postives = 59/118 (50.00%), Query Frame = -1
Query:  329 SNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCI--------IPKENNFKQPGERYRSWAPDRQER 658
            S D++LQ R+FSY DT R+RLG NY Q+PVN P+C  H++  DG+M   +     +Y PS   P    +     P+      EK              + + QPG+ YRS   D +ER
Sbjct:  327 SPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNRPRCPFHSSSRDGYMQNGYYGSLQNYTPSSL-PGYKEDKSARDPKFNLAHIEKEFEVWNWDYRAEDSDYYTQPGDYYRSLPADEKER 443          
BLAST of CN189702 vs. ExPASy Swiss-Prot
Match: CATA_BORPE (Catalase OS=Bordetella pertussis GN=katA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = -1
Query:  329 SNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFKQPGERYRSWAPDRQER 658
            S DK+LQ R+FSY DT R+RLG N+ Q+PVNAP+C  H+ H DG      +    ++Y P+ +   R A+    PP    G+       +  E+ + QPG  +R    D++++
Sbjct:  328 SPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAAEPPLALDGQAADRWNHRVDEDYYSQPGALFRLMNDDQKQQ 440          
BLAST of CN189702 vs. ExPASy Swiss-Prot
Match: CATA_BORPA (Catalase OS=Bordetella parapertussis GN=katA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = -1
Query:  329 SNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFKQPGERYRSWAPDRQER 658
            S DK+LQ R+FSY DT R+RLG N+ Q+PVNAP+C  H+ H DG      +    ++Y P+ +   R A+    PP    G+       +  E+ + QPG  +R    D++++
Sbjct:  328 SPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAAEPPLALDGQAADRWNHRVDEDYYSQPGALFRLMNDDQKQQ 440          
BLAST of CN189702 vs. ExPASy Swiss-Prot
Match: CATA_BORBR (Catalase OS=Bordetella bronchiseptica GN=katA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = -1
Query:  329 SNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFKQPGERYRSWAPDRQER 658
            S DK+LQ R+FSY DT R+RLG N+ Q+PVNAP+C  H+ H DG      +    ++Y P+ +   R A+    PP    G+       +  E+ + QPG  +R    D++++
Sbjct:  328 SPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAAEPPLALDGQAADRWNHRVDEDYYSQPGALFRLMNDDQKQQ 440          
BLAST of CN189702 vs. ExPASy Swiss-Prot
Match: CATA2_CAEEL (Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  371 SNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAP-KCAQHNNHYDGFMNFMHRDEEIDYFPSRY------DPVRHAEMHPTPPEICGGRREKCIIPKENNFKQP 658
            S DK+LQ RIFSY DT  HRLGPNY+QLPVN P +   H    DG M +  + +  +YFP+ +      D V+ +    T      G  ++     ++N++QP
Sbjct:  342 SPDKMLQGRIFSYTDTHYHRLGPNYIQLPVNCPYRSRAHTTQRDGAMAYESQGDAPNYFPNSFRGYRTRDDVKESTFQTT------GDVDRYETGDDHNYEQP 438          
BLAST of CN189702 vs. ExPASy Swiss-Prot
Match: CATA_STAXY (Catalase A OS=Staphylococcus xylosus GN=katA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 50/164 (30.49%), Postives = 80/164 (48.78%), Query Frame = -1
Query:  191 SNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPSRYDPVRHAEMHPTPP-EICGGRREKCIIPKENN-FKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNVRPN 658
            S DK+LQ R+FSY DTQR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+          +  P  +I G   E      ++N F+QPG+ +R  + + Q+       + +S   VT  ++H  I +  +A  + GQ +A  + +  N
Sbjct:  324 SPDKMLQGRLFSYGDTQRYRLGVNHWQIPVNQPKGVGMENICPFSRDGHMRILDNNQGASTHYYPNSNGAFEDQPQYKKPALDIQGQAYEYDFREDDDNYFEQPGKLFRLLSSEEQQILFNNTANEMSP--VTDALKHRHIRHCYKADPAYGQGVAEAMGIDIN 485          
BLAST of CN189702 vs. ExPASy Swiss-Prot
Match: CATA_HAEIN (Catalase OS=Haemophilus influenzae GN=katA PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 45/156 (28.85%), Postives = 69/156 (44.23%), Query Frame = -1
Query:  200 SNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYF-PSRYDPVRHAEMHPTPPEICGGRREKCIIPKENN--FKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNV 658
            S D++LQ R+F+YAD QR+RLG NY Q+PVN P+C  H+N  DG          + ++ P+ +   +       PP    G         ++N  F QP   +     ++++        A+ D     + RHI   +W  A    G   A  L V
Sbjct:  334 SPDRMLQARLFNYADAQRYRLGVNYRQIPVNRPRCPVHSNQRDGQGRVDGNYGSLPHYEPNSFSQWQQQPDFAEPPLRINGDAAHWDYRNDDNDYFSQPRALFNLMNAEQKQSLFNNTAAAMGDAPDFIKYRHIRNCHWCDAAYGEGVAKALGLTV 489          
The following BLAST results are available for this feature:
BLAST of CN189702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CATA_HELPY4.415e-1135.59Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2[more]
CATA_HELPJ4.415e-1135.59Catalase OS=Helicobacter pylori J99 GN=katA PE=3 S... [more]
CATA_BORPE4.415e-1135.40Catalase OS=Bordetella pertussis GN=katA PE=1 SV=1[more]
CATA_BORPA4.415e-1135.40Catalase OS=Bordetella parapertussis GN=katA PE=3 ... [more]
CATA_BORBR4.415e-1135.40Catalase OS=Bordetella bronchiseptica GN=katA PE=3... [more]
CATA2_CAEEL4.415e-1137.86Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2... [more]
CATA_STAXY5.767e-1130.49Catalase A OS=Staphylococcus xylosus GN=katA PE=3 ... [more]
CATA_HAEIN9.836e-1128.85Catalase OS=Haemophilus influenzae GN=katA PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189702 ID=CN189702; Name=CN189702; organism=Citrus sinensis; type=EST; length=661bp
CTTTGACGTAACCAGCATTTATTTTAAGGAACATCATGTTTATGAATTAC
AGGACCAACATGTTTTTTTTAGTATTACAAAATAACACACCACCCGAAAA
CGAATTCGCATTCCTTAAACTGCTGACGTCCTCTGTGTTTACTCCTTGCT
AACTCTTTCTAAATCACTCAGCTCCGCATCACCATTAAATGTTAGGCCTC
ACATTCAGACGAGATGCCAACTTCTGACCCAGAGACTTGCAAGCCTGAGA
CCAGTATGAGATCCATATGTGGCGGATCTCATGGGTGACGCGTGGATCAG
ATAAAGCATCAACCCATCTGCAGATGAATCGCTCTTGCCTGTCTGGTGCC
CAAGATCGGTATCTCTCTCCAGGTTGTTTGAAGTTGTTTTCCTTTGGAAT
TATGCACTTCTCGCGCCTTCCGCCGCAGATTTCAGGAGGAGTTGGATGCA
TCTCAGCATGACGGACAGGATCATACCTTGAAGGGAAGTAATCGATCTCC
TCATCCCTGTGCATGAAATTCATGAAACCGTCATAATGATTGTTGTGCTG
AGCACATTTGGGTGCATTTACTGGGAGTTGAAGATAGTTCGGCCCTAGAC
GGTGCCTCTGAGTATCAGCATAGGAGAAGATTCGAGTCTGGAGCAACTTA
TCATTTGAAAT
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