EY758040

Overview
NameEY758040
Unique NameEY758040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.673e-47
Identity = 86/158 (54.43%), Postives = 119/158 (75.32%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL 555
            +Y+VVGR LP+E +    +Y+M+++A + + AKS+FWYFLR+LKK KK+ G++++I +++E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+  IQIIK  +IPA   +R   KQFH+SKIKFPLV R     +RKL
Sbjct:    9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.296e-46
Identity = 86/171 (50.29%), Postives = 123/171 (71.93%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+KK++G+++    +FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN  +
Sbjct:    9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.136e-45
Identity = 82/162 (50.62%), Postives = 120/162 (74.07%), Query Frame = 1
Query:   79 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTT 564
            ++Y VVGR +PTE +    I++M+++ATN V AKS+FWYF+  L++VKK+NG++L+I ++FEKNP  +KNYG+WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++  I I+K  T+ A+  KR   K FH++KI+FPL  R  +  +  + TT
Sbjct:   11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTT 172          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_ICTPU (60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.060e-44
Identity = 84/171 (49.12%), Postives = 120/171 (70.18%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ +    + E++P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RP   +
Sbjct:    9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTFF 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.410e-43
Identity = 87/174 (50.00%), Postives = 121/174 (69.54%), Query Frame = 1
Query:   76 FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            F +YQV+GR LPTES   PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I I+K A I      KR+  KQF    +KFPL  R      +K   T+   RP+  Y
Sbjct:    4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTFY 172          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.923e-43
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ +    + EK P K+KN+G+WLR  SR+G HNMY+EYRD T + AV Q Y +M +RHR R+  I I+K   I A  C+R + KQFH+SKIKFPL  R +R   R+    +   RPN  +
Sbjct:    9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTFF 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 3.192e-41
Identity = 84/172 (48.84%), Postives = 114/172 (66.28%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            +YQVVGR +PTE +  PK++RM+L+A NE  AKS++WYFL+ + KVKK+ G+++AINEI E  P K K +GIW+RY SR+G HNMYKE+RDTT  GAVE MY +MA+RHR R   I+I+K   +  K   +R   KQ  N  +KFPL  R+        +  +   RP+  Y
Sbjct:    5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176          
The following BLAST results are available for this feature:
BLAST of EY758040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_DROME8.673e-4754.4360S ribosomal protein L18a OS=Drosophila melanogas... [more]
RL18A_DANRE3.296e-4650.2960S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
RL18A_CAEEL2.136e-4550.6260S ribosomal protein L18a OS=Caenorhabditis elega... [more]
RL18A_ICTPU1.060e-4449.1260S ribosomal protein L18a OS=Ictalurus punctatus ... [more]
RL20_YEAST3.410e-4350.0060S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_SALSA9.923e-4347.9560S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]
RL20_SCHPO3.192e-4148.8460S ribosomal protein L20 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-030-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY758040 ID=EY758040; Name=EY758040; organism=Citrus sinensis; type=EST; length=920bp
CCCGCGTCCGGAGAGAGAGTTTACGCTGCGGAGATCGTCACATCTTGTAT
TTCCTCGAAAATGGTCACTTTCAGGTTTCACCAGTATCAGGTTGTTGGGA
GAGCTCTTCCAACTGAGTCCGATGAGCATCCTAAGATTTACAGGATGAAG
TTGTGGGCCACGAATGAGGTTCGAGCCAAGTCCAAGTTCTGGTACTTTCT
TAGAAAGCTCAAGAAGGTCAAGAAGAGTAATGGTCAAATGCTTGCCATTA
ACGAGATTTTTGAGAAGAACCCAACCAAGATCAAGAACTATGGCATCTGG
TTGCGTTATCAGAGTCGAACTGGTTATCACAATATGTACAAGGAGTACCG
TGATACCACTCTGAACGGGGCTGTGGAGCAGATGTACACTGAGATGGCTT
CTCGCCATAGGGTCAGGTCTCCTTGCATTCAAATTATCAAGACTGCTACC
ATCCCTGCCAAGCTATGCAAGAGAGAAAGCACCAAGCAGTTCCACAATTC
AAAAATCAAGTTTCCCTTGGTGTTCAGGAAGGTGAGACCACCAAGCAGGA
AGCTGAGGACCACATACAAAGCAACAAGGCCTAACTTGGTTTATGAACTC
TCTTATCCTTTGATAATTGAGACTTCAGGAGGGTTTACAGTGGATATCTA
TCTATTTTTCTAAAAATATTTTGGGAGTTCCTTTTAGGCAGTTGTTTTTG
GTCAACGGATTCCTGGTTTTATGTGAGAATATAAGGGGTTGAGACTAACG
AACCTGATCCTTGGGATTGCAAATTTATGTTTTGGTACCGGTTAAAAAAA
AAAAAAAAAAAAAGAGCGGGCCTTTTAAAGATCCAACTTACGTACCGGGG
CTGCAACCTTTAACCTTTCTTAAGGCCCCAAATTCATTCCGGGCGCCTTT
TTTAAGCCCGGATGTGGAAC
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