CN189686

Overview
NameCN189686
Unique NameCN189686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 3
Query:    6 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            DIVF+++ K+HPKFKR G ++     +SL EALCG    +  LDGR   I     ++VKP   + I   G+P  + P  RG L I F V  P
Sbjct:  230 DIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRN--IPMSVNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFP 319          
BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 3
Query:    6 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            DIVFV++ KEHPKFKR G ++     +SL EALCG    +  +DGR L +     ++VKP   + +   G+P  + P  RG L I F V  P
Sbjct:  230 DIVFVIKDKEHPKFKRDGSNIVYTAKISLREALCGCSLNVPTMDGRNLPMSVT--DIVKPGMRRRVIGYGLPFPKNPDQRGDLLIEFDVSFP 319          
BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEEL (DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 3
Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GD+ F ++ ++HP+F+RKGDDL+   T+SL +AL GF+  I HLDG   ++K Q  +V  P       DEGMP  +    +G L + F V  P
Sbjct:  236 GDLKFKIRIQKHPRFERKGDDLYTNVTISLQDALNGFEMEIQHLDGH--IVKVQRDKVTWPGARLRKKDEGMPSLEDNNKKGMLVVTFDVEFP 326          
BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: MAS5_YEAST (Mitochondrial protein import protein MAS5 OS=Saccharomyces cerevisiae GN=YDJ1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 3
Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GD+VF++ ++ H  FKR GDDL  E  + L  A+ G +F + H+ G  L +   PGEV+ P   K I  +GMP+  +    G L I FT+  P
Sbjct:  245 GDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI-PKYGGYGNLIIKFTIKFP 336          
BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJB4_BOVIN (DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 3
Query:    6 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            DIVFV++ K+HPKFKR G ++     +SL EALCG    +  +DGR   I     ++VKP   + I   G+P  + P  RG L I F V  P
Sbjct:  230 DIVFVIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTMDGR--TIPMTINDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFP 319          
BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: SIS1_YEAST (Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = 3
Query:   15 FVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQL-LIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            FV+Q+K HP FKR GDDL     LS  E+L GF   I  +DGR L L + QP   V+P Q      +GMP  + P  RG L + + V  P
Sbjct:  251 FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYP 337          
BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog OS=Dictyostelium discoideum GN=dnaja1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 3
Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GD++  +++K +  FKR GD+L     L L +++ G QF+I  LD R+L +  + G+++K    + I +EGMP+ +    +GKL I F +  P
Sbjct:  275 GDVIITIREKPNVNFKRNGDNLIYTKRLKLLDSIAGSQFIINTLDQRKLWVNHEKGDIIKQGDMRYIENEGMPI-KGTSRKGKLIIAFDIEYP 366          
The following BLAST results are available for this feature:
BLAST of CN189686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DNJB4_HUMAN4.292e-1241.30DnaJ homolog subfamily B member 4 OS=Homo sapiens ... [more]
DNJB4_MOUSE5.606e-1241.30DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]
DNJ20_CAEEL5.606e-1240.86DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=d... [more]
MAS5_YEAST1.249e-1138.71Mitochondrial protein import protein MAS5 OS=Sacch... [more]
DNJB4_BOVIN1.249e-1141.30DnaJ homolog subfamily B member 4 OS=Bos taurus GN... [more]
SIS1_YEAST8.094e-1143.33Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 P... [more]
DNJA1_DICDI8.094e-1134.41DnaJ homolog subfamily A member 1 homolog OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E05_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189686 ID=CN189686; Name=CN189686; organism=Citrus sinensis; type=EST; length=686bp
ACGGTGACATTGTATTTGTTCTACAACAGAAAGAGCACCCGAAATTTAAG
CGAAAGGGTGATGACCTATTTGTTGAGCACACCCTGTCACTGACAGAAGC
TCTCTGTGGCTTTCAATTTGTAATAACTCATTTGGATGGCCGGCAACTCC
TCATCAAATCCCAGCCTGGGGAAGTAGTCAAGCCGGACCAATTCAAGGCC
ATAAATGATGAAGGAATGCCTATGTATCAGAGGCCATTTATGAGGGGCAA
ACTGTACATTCATTTCACTGTTTGACTTCCCTGAGTCACTGAGCCCAGAC
CAGTGCAAGATGCTGGAGACCGTACTACCTCCAAGGACCTCAGTCCAGCT
CACCGATATGGAACTGGATGAGTGTGAAGAAACAACCCTGCATGATGTGA
ACATTGAGGAGGAAATGCGAAGGAAGCAACAAGCAGCTCAGGAGGCATAC
GATGAAGATGACGATATGCAAGGTGGTGCCCAGAGAGTGCAGTGTGCTCA
GCAGTGATGATGTAGAAGAAAAGGGGTGGCCTGATTTAGTATTTTCATTG
TTTGGGAGAAAAAGATTCTCAACATATTTATTTTCTGTTATAGGCTTTAG
AGGTTCTAGTTTTGGTTTGTCTGTCCTTATTCTTATGTTTTTCTGATAAC
TGACTATGTAATGGAATTCTAGCGTTGCACCTTCAA
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