CN189685 | Citrus Genome Database

Overview


Name	CN189685
Unique Name	CN189685
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	693

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.507e-25
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = -2

Query:  414 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 692
            GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V  P
Sbjct:  237 GDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFP 329

HSP 2 Score: 35.8094 bits (81), Expect = 2.507e-25
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = -3

Query:  272 DFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 421
            +FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  327 NFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.263e-25
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = -2

Query:  414 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 692
            GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F +  P
Sbjct:  237 GDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKINFP 329

HSP 2 Score: 35.8094 bits (81), Expect = 3.263e-25
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = -3

Query:  272 DFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 421
            +FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  327 NFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.524e-25
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = -2

Query:  414 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 692
            GDIV +LQ+KEH  F+R G+DL + + + L EALCGFQF   HLDGRQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V  P
Sbjct:  246 GDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFP 338

HSP 2 Score: 25.0238 bits (53), Expect = 5.524e-25
Identity = 15/43 (34.88%), Postives = 24/43 (55.81%), Query Frame = -3

Query:  311 FPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 418
            FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  337 FPENNWINPDKLSELEDLLPSRPEVPNIIGETEEVELQEFDST 379

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: DNJA2_BOVIN (DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.356e-25
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = -2

Query:  414 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 692
            GDIV +LQ+KEH  F+R G+DL + + + L EALCGFQF   HLDGRQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V  P
Sbjct:  246 GDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFP 338

HSP 2 Score: 24.2534 bits (51), Expect = 9.356e-25
Identity = 15/43 (34.88%), Postives = 23/43 (53.49%), Query Frame = -3

Query:  311 FPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 418
            FPE+  ++PD+   LE +LP R  V        ++EL E + T
Sbjct:  337 FPENNWINPDKLSELEDLLPSRPEVPNIIGDTEEVELQEFDST 379

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.684e-24
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = -2

Query:  414 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 692
            GDIV +LQ+KEH  F+R G+DL + + + L EALCGFQF   HLD RQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V  P
Sbjct:  246 GDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFP 338

HSP 2 Score: 25.0238 bits (53), Expect = 2.684e-24
Identity = 15/43 (34.88%), Postives = 24/43 (55.81%), Query Frame = -3

Query:  311 FPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 418
            FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  337 FPENNWINPDKLSELEDLLPSRPEVPNVIGETEEVELQEFDST 379

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.001e-23
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = -2

Query:  414 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 692
            GDIV  +Q+KEH  F+R G+DL + + + L EALCGFQF   HLD RQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V  P
Sbjct:  246 GDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFP 338

HSP 2 Score: 25.0238 bits (53), Expect = 1.001e-23
Identity = 15/43 (34.88%), Postives = 24/43 (55.81%), Query Frame = -3

Query:  311 FPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 418
            FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  337 FPENNWINPDKLSELEDLLPSRPEVPNVIGETEEVELQEFDST 379

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.197e-22
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -2

Query:  414 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 692
            GD++ VL QK+H  F+R+G DL ++  + L+EALCGF+  I  LD R L+I S+ GEV+K    K I +EGMP+Y+ P  +G + I F V  P
Sbjct:  238 GDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFP 330

HSP 2 Score: 31.9574 bits (71), Expect = 5.197e-22
Identity = 19/56 (33.93%), Postives = 33/56 (58.93%), Query Frame = -3

Query:  269 FISLFDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 436
            F+ +F   + LS ++   LE +LPPR  V++TD ++D+ E   L + N  E+  R+
Sbjct:  325 FLVVFPEKQWLSQEKLPQLEALLPPRQKVRITD-DMDQVE---LKEFNPNEQSWRQ 376

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.937e-21
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -2

Query:  414 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 692
            GD++ VL QK+H  F+R+G DL ++  + L+EALCGF+  I  LD R L+I S+ GEV+K    + + DEGMP+Y+ P  +G L I F V  P
Sbjct:  238 GDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFP 330

HSP 2 Score: 30.0314 bits (66), Expect = 1.937e-21
Identity = 15/40 (37.50%), Postives = 25/40 (62.50%), Query Frame = -3

Query:  317 FISLFDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECE 436
            F+ +F     LS ++   LE +LPPR  V++TD ++D+ E
Sbjct:  325 FLVIFPEKHWLSLEKLPQLEALLPPRQKVRITD-DMDQVE 363

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.198e-19
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = -2

Query:  414 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 692
            GD++FV+ QKEHP+FKR GD LF E  + L  AL G Q V+ HLD R L I   PGE ++P++ K +  +GM + QR    G LYI F V  P
Sbjct:  239 GDVIFVIDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGECIRPNELKVLPGQGM-LSQRHHQPGNLYIRFHVDFP 330

HSP 2 Score: 25.7942 bits (55), Expect = 2.198e-19
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = -3

Query:  359 DFPES--LSPDQCKMLETVLPPR 421
            DFPE    +P+Q  +LE  LPPR
Sbjct:  328 DFPEPNFATPEQLALLEKALPPR 350

[Close]

BLAST of CN189685 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = -2

Query:  414 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 689
            DIVF+++ K+HPKFKR G ++     +SL EALCG    +  LDGR   I     ++VKP   + I   G+P  + P  RG L I F V  P
Sbjct:  230 DIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRN--IPMSVNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFP 319

The following BLAST results are available for this feature:

BLAST of CN189685 vs. ExPASy Swiss-Prot

BLAST of CN189685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27


Match Name	E-value	Identity	Description
DNJA1_BOVIN	2.507e-25	49.46	DnaJ homolog subfamily A member 1 OS=Bos taurus GN...	[more]
DNAJ1_CERAE	3.263e-25	48.39	DnaJ homolog subfamily A member 1 OS=Cercopithecus...	[more]
DNJA2_HUMAN	5.524e-25	51.61	DnaJ homolog subfamily A member 2 OS=Homo sapiens ...	[more]
DNJA2_BOVIN	9.356e-25	51.61	DnaJ homolog subfamily A member 2 OS=Bos taurus GN...	[more]
DNJA2_MOUSE	2.684e-24	50.54	DnaJ homolog subfamily A member 2 OS=Mus musculus ...	[more]
DNJA2_RAT	1.001e-23	49.46	DnaJ homolog subfamily A member 2 OS=Rattus norveg...	[more]
DNJA4_MOUSE	5.197e-22	46.24	DnaJ homolog subfamily A member 4 OS=Mus musculus ...	[more]
DNJA4_HUMAN	1.937e-21	46.24	DnaJ homolog subfamily A member 4 OS=Homo sapiens ...	[more]
MAS5_SCHPO	2.198e-19	48.39	Mitochondrial protein import protein mas5 OS=Schiz...	[more]
DNJB4_PONAB	4.367e-12	41.30	DnaJ homolog subfamily B member 4 OS=Pongo abelii ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0002E05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN189685 ID=CN189685; Name=CN189685; organism=Citrus sinensis; type=EST; length=693bp
CCCCCCTTTTGAAGGTGCAACGCTAGAATTCCATTACATAGTCAGTTATC
AGAAAAACATAAGAATAAAGACAGACAAACCAAAACTAGAACCTCTAAAG
CCTATAACAGAAAATAAATATGTTGAGAATCTTTTTCTCCCAAACAATGA
AAATACTAAATCAGGCCACCCCTTTTCTTCTACATCATCACTGCTGAGCA
CACTGCACTCTCTGGGCACCACCTTGCATATCGTCATCTTCATCGTATGC
CTCCTGAGCTGCTTGTTGCTTCCTTCGCATTTCCTCCTCAATGTTCACAT
CATGCAGGGTTGTTTCTTCACACTCATCCAGTTCCATATCGGTGAGCTGG
ACTGAGGTCCTTGGAGGTAGTACGGTCTCCAGCATCTTGCACTGGTCTGG
GCTCAGTGACTCAGGGAAGTCAAACAGTGAAATGAATGTACAGTTTGCCC
CTCATAAATGGCCTCTGATACATAGGCATTCCTTCATCATTTATGGCCTT
GAATTGGTCCGGCTTGACTACTTCCCCAGGCTGGGATTTGATGAGGAGTT
GCCGGCCATCCAAATGAGTTATTACAAATTGAAAGCCACAGAGAGCTTCT
GTCAGTGACAGGGTGTGCTCAACAAATAGGTCATCACCCTTTCGCTTAAA
TTTCGGGTGCTCTTTCTGTTGTAGAACAAATACAATGTCACCC