CN189684

Overview
NameCN189684
Unique NameCN189684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_METTH (V-type ATP synthase beta chain OS=Methanobacterium thermoautotrophicum GN=atpB PE=3 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 5.834e-93
Identity = 166/246 (67.48%), Postives = 198/246 (80.49%), Query Frame = 1
Query:   10 EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            E IQTGISTID MN++ RGQK+P+FS +GLPHNE+AAQI RQA ++             EE  FA++FAAMG+  E A +F RDFE  G++ERVT+F+NLA+DP IERIITPR+ALTTAEY A+E   HVLVILTD+++Y +ALRE+SAAREEVPGRRGYPGYMYTDLA +YERAGRI G++GSITQ+PIL MP DDITHP PDLTGYITEGQI + R L  + IYPP++VLPSLSRLM   IGEG
Sbjct:  131 EFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVL------------AEESEFAVIFAAMGITHEEANYFMRDFERTGALERVTVFMNLADDPAIERIITPRMALTTAEYFAFEHDMHVLVILTDLTNYCEALREISAAREEVPGRRGYPGYMYTDLASLYERAGRIVGKEGSITQMPILVMPQDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPVDVLPSLSRLMSGGIGEG 364          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_NATPD (V-type ATP synthase beta chain OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=atpB PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.217e-92
Identity = 168/247 (68.02%), Postives = 198/247 (80.16%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            EE IQTG+S ID MN++ RGQK+P+FS +GLPHNE+A QI RQA + +     D   E G E  FA++F AMG+  E A  F  DFE  G++ER  +F+NLA+DP +ER +TPR+ALTTAEYLA+E G HVLVILTDM++Y +ALRE+ AAREEVPGRRGYPGYMYTDLAQ+YERAGRIEGR+GS+TQIPILTMP DD THP PDLTGYITEGQIYIDR L ++ I PPINVLPSLSRLM   IGEG
Sbjct:  124 EEFIQTGVSAIDGMNTLIRGQKLPIFSGSGLPHNELALQIARQASVPEEESGDD---EAGSE--FAVIFGAMGITQEEANEFMDDFERTGALERSVVFMNLADDPAVERTVTPRMALTTAEYLAFEEGYHVLVILTDMTNYCEALREIGAAREEVPGRRGYPGYMYTDLAQLYERAGRIEGREGSVTQIPILTMPGDDDTHPIPDLTGYITEGQIYIDRNLNSQGIEPPINVLPSLSRLMDDGIGEG 365          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_METLZ (V-type ATP synthase beta chain OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=atpB PE=3 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.781e-92
Identity = 167/247 (67.61%), Postives = 194/247 (78.54%), Query Frame = 1
Query:   10 EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM 750
            + IQTGISTID  N++ RGQK+P+FS+AGLPHNEIA QI RQA +             G  D FA+VFAAMG+  E A +F  DFE  G++ER  +FLNLA+DP +ER +TPR+ALTTAEYLAYE G HVLVILTDM++Y +ALR++ AAREEVPGRRGYPGYMYTDLA IYERAG I+G KGS+TQIPILTMP DDITHP PDLTGYITEGQI I  +L  + IYPPINVLPSLSRLM   IG+GM
Sbjct:  124 DFIQTGISTIDGTNTLVRGQKLPIFSSAGLPHNEIALQIARQAKV------------PGSSDEFAVVFAAMGITREEANYFMADFERTGALERAVVFLNLADDPAVERTVTPRLALTTAEYLAYELGYHVLVILTDMTNYCEALRQIGAAREEVPGRRGYPGYMYTDLASIYERAGIIKGLKGSVTQIPILTMPGDDITHPIPDLTGYITEGQIVISPELHRKGIYPPINVLPSLSRLMNLGIGKGM 358          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_ARCFU (V-type ATP synthase beta chain OS=Archaeoglobus fulgidus GN=atpB PE=3 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 4.939e-92
Identity = 166/246 (67.48%), Postives = 196/246 (79.67%), Query Frame = 1
Query:   10 EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            E IQTGIS ID MN++ RGQK+P+FS +GLPHN+IA QI RQA +             GE + FA++FAAMG+  E A  F ++FE  G++ER  +FLNLANDP IER++TPR+ALT AE+LAYE   H+LVILTDM++Y +ALRE+SAAREEVPGRRGYPGYMYTDLA IYERAGRI GRKG+ITQ+PILTMP DDITHP PDLTGYITEGQI + R+L  + IYPPINVLPSLSRLMK  IGEG
Sbjct:  124 EFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNDIALQIARQAKV------------RGEGEEFAVIFAAMGITYEEAYQFMKEFERTGALERAVVFLNLANDPAIERLLTPRMALTAAEFLAYEYDLHILVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGTITQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHAKGIYPPINVLPSLSRLMKEGIGEG 357          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_METS3 (V-type ATP synthase beta chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=atpB PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 8.424e-92
Identity = 162/245 (66.12%), Postives = 199/245 (81.22%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIG 741
            EE IQTGISTID MN++ RGQK+P+FS +GLPHNE+AAQI RQA ++            G++  FA++FAAMG+  E A FF RDFE  G++E+VT+F+NLA+DP IERI+TP++ALTTAEY A+  G  VLVILTDM++Y +ALRE+SAAR+EVPGRRGYPGYMYTDLA IYERAGRI+G++GSITQ+PIL MP DDITHP PDLTGYITEGQI + R+L  + IYPP++VLPSLSRLM   IG
Sbjct:  130 EEFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVL------------GDDAEFAVIFAAMGITHEEANFFMRDFERTGALEKVTVFMNLADDPAIERILTPKMALTTAEYFAFTLGMQVLVILTDMTNYCEALREISAARDEVPGRRGYPGYMYTDLANIYERAGRIDGKEGSITQMPILVMPQDDITHPIPDLTGYITEGQIVLSRELNRKGIYPPVDVLPSLSRLMSGGIG 362          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_HALWD (V-type ATP synthase beta chain OS=Haloquadratum walsbyi (strain DSM 16790) GN=atpB PE=3 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.100e-91
Identity = 162/248 (65.32%), Postives = 198/248 (79.84%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM 750
            EE IQTG++ +D MN++ RGQK+P+FS +GLPHNE+A QI RQA  V   E  D+  +DG E  FA++F AMG+  E A  F  DFE  G++ER  +F+NLA+DP +ER +TPR+ LTTAEYLA+E   HVLVILTDM++Y +ALRE+ AAREEVPGRRGYPGYMYTDLA +YERAGRIEGR+GS+TQIPILTMP DD THP PDLTGYITEGQIY+DR L ++ + PP+NVLPSLSRLM   IGEG+
Sbjct:  123 EEFIQTGVAAVDGMNTLVRGQKLPIFSGSGLPHNELALQIARQA-TVPEEENADDNEDDGSE--FAVIFGAMGITAEEANEFMEDFERTGALERSVVFMNLADDPAVERTVTPRMVLTTAEYLAFEKDYHVLVILTDMTNYCEALREIGAAREEVPGRRGYPGYMYTDLATLYERAGRIEGREGSVTQIPILTMPGDDDTHPIPDLTGYITEGQIYVDRDLNSQGVQPPVNVLPSLSRLMDDGIGEGL 367          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_HALVO (V-type ATP synthase beta chain OS=Halobacterium volcanii GN=atpB PE=1 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.100e-91
Identity = 165/248 (66.53%), Postives = 196/248 (79.03%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM 750
            EE IQTG+S ID MN++ RGQK+P+FSA+GLPHN++A QI RQA + +  E        GEE  FA+VF AMG+  E A  F  DFE  G++ER  +F NLA+DP +ER +TPR+ALTTAEYLA++   HVLVILTDM++Y +ALRE+ AAREEVPGRRGYPGYMYTDLAQ+YERAGRI+GR GS+TQIPILTMP DD THP PDLTGYITEGQIYIDR L ++ I PPIN LPSLSRLM   IGEG+
Sbjct:  123 EEFIQTGVSAIDGMNTLVRGQKLPIFSASGLPHNDLALQIARQATVPEDEES-------GEESEFAVVFGAMGITQEEANEFMEDFERTGALERSVVFTNLADDPAVERTVTPRLALTTAEYLAFDKDYHVLVILTDMTNYCEALREIGAAREEVPGRRGYPGYMYTDLAQLYERAGRIQGRDGSVTQIPILTMPGDDDTHPIPDLTGYITEGQIYIDRDLNSQGIRPPINPLPSLSRLMDDGIGEGL 363          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_METMJ (V-type ATP synthase beta chain OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=atpB PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.877e-91
Identity = 164/247 (66.40%), Postives = 197/247 (79.76%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            E+ IQTGISTID  N++ RGQK+P+FSA+GLPHN++A QI RQA +             G  + FA+VFAAMG+  E A +F  DFE+ G++ER  +FLNLA+DP +ER ITPR+ALTTAEYLA++ G HVLVILTDM++Y +ALR++ AAREEVPGRRGYPGYMYTDLA IYERAG I+G KGS+TQIPILTMP DDITHP PDLTGYITEGQI ++R+L  + IYPPINVLPSLSRLM   IGEG
Sbjct:  123 EDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNDVALQIARQAKV------------PGSTEEFAVVFAAMGITREEANYFMADFEKTGALERSVVFLNLADDPAVERTITPRLALTTAEYLAFDLGYHVLVILTDMTNYCEALRQIGAAREEVPGRRGYPGYMYTDLASIYERAGIIKGVKGSVTQIPILTMPGDDITHPIPDLTGYITEGQIVVNRELHRKGIYPPINVLPSLSRLMNLGIGEG 357          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_UNCMA (V-type ATP synthase beta chain OS=Uncultured methanogenic archaeon RC-I GN=atpB PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.451e-91
Identity = 166/249 (66.67%), Postives = 195/249 (78.31%), Query Frame = 1
Query:    1 EAEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            + ++ IQTGISTID MN++ RGQK+P+FS +GLPHNEIA QI RQA +V            G  + FA+VF AMG+  E AQ F +DFE  G++ER  +FLNLA+DP IERIITPR+ALTTAEYLA+E   HVLVI TDM++Y +ALR++ AAREEVPGRRGYPGYMYTDLAQ+YERAG IEG+KGSITQ+PILTMP DDITHP PDLTGYITEGQI + R L  + IYPPINV PSLSRLM   IG G
Sbjct:  121 QPKDFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNEIALQIARQAKVV------------GSTEPFAVVFCAMGITAEEAQTFMKDFERTGALERAVVFLNLADDPAIERIITPRLALTTAEYLAFEHDMHVLVIYTDMTNYCEALRQIGAAREEVPGRRGYPGYMYTDLAQLYERAGIIEGKKGSITQVPILTMPGDDITHPIPDLTGYITEGQIVVARDLHRKNIYPPINVSPSLSRLMSLGIGAG 357          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB3_METHJ (V-type ATP synthase beta chain 3 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpB3 PE=3 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.201e-91
Identity = 162/246 (65.85%), Postives = 200/246 (81.30%), Query Frame = 1
Query:   10 EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            + IQTGIS+ID MN++ RGQK+P+FS AGLPHN +A+QI RQA +             G+ + FA+VFAAMG+  E + FF R+FEE+G++ER  LFLNLA+DP IERIITPR+ALTTAEYLA++ G HVLV+LTD+++Y +ALRE++AAREEVPGRRGYPGY+YTDLA +YERAGRI GR+GSITQIPILTMP+DDITHP PDLTGYITEGQI + R L  + IYPP++VLP LSRLM+  IG G
Sbjct:  130 DSIQTGISSIDGMNTLVRGQKLPIFSGAGLPHNLLASQIARQAKVT------------GQAEKFAVVFAAMGITYEESAFFIREFEESGALERTVLFLNLADDPAIERIITPRLALTTAEYLAFDKGMHVLVVLTDLTNYCEALREIAAAREEVPGRRGYPGYIYTDLASLYERAGRIRGREGSITQIPILTMPDDDITHPVPDLTGYITEGQIVLSRDLHRKGIYPPVDVLPCLSRLMQGGIGPG 363          
The following BLAST results are available for this feature:
BLAST of CN189684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATB_METTH5.834e-9367.48V-type ATP synthase beta chain OS=Methanobacterium... [more]
VATB_NATPD2.217e-9268.02V-type ATP synthase beta chain OS=Natronomonas pha... [more]
VATB_METLZ3.781e-9267.61V-type ATP synthase beta chain OS=Methanocorpuscul... [more]
VATB_ARCFU4.939e-9267.48V-type ATP synthase beta chain OS=Archaeoglobus fu... [more]
VATB_METS38.424e-9266.12V-type ATP synthase beta chain OS=Methanobrevibact... [more]
VATB_HALWD1.100e-9165.32V-type ATP synthase beta chain OS=Haloquadratum wa... [more]
VATB_HALVO1.100e-9166.53V-type ATP synthase beta chain OS=Halobacterium vo... [more]
VATB_METMJ1.877e-9166.40V-type ATP synthase beta chain OS=Methanoculleus m... [more]
VATB_UNCMA2.451e-9166.67V-type ATP synthase beta chain OS=Uncultured metha... [more]
VATB3_METHJ3.201e-9165.85V-type ATP synthase beta chain 3 OS=Methanospirill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189684 ID=CN189684; Name=CN189684; organism=Citrus sinensis; type=EST; length=751bp
GAGGCTGAAGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAA
CTCCATTGCTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTC
CCCATAATGAAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAG
CGATTGGAGAAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTT
TGCAATTGTGTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTT
TCAAACGTGATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTT
CTGAATCTGGCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTAT
TGCTCTTACTACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTC
TTGTCATACTGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTG
TCTGCTGCCCGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATAT
GTATACTGATTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTC
GAAAAGGTTCCATCACCCAAATTCCAATATTGACTATGCCAAATGACGAT
ATTACACATCCCACTCCAGATCTTACGGGATATATCACCGAGGGGCAGAT
TTACATTGACAGGCAGCTCCAGAACAGACAGATATATCCTCCGATCAATG
TCCTTCCGTCCCTATCTCGTCTGATGAAGAGTGCTATTGGTGAGGGGATG
A
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