CN189684

Overview
NameCN189684
Unique NameCN189684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_METBU (V-type ATP synthase beta chain OS=Methanococcoides burtonii (strain DSM 6242) GN=atpB PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.345e-89
Identity = 162/247 (65.59%), Postives = 195/247 (78.95%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            E+ IQTGISTID  N++ RGQK+P+FS +GLPHNEIA QI RQA +             G ++ FA+VFAAMG+  E AQ+F  DFE+ G++ER  +FLNLA+DP +ERI+TPR+ALT AEYLAYE   HVLVILTD+++Y +ALR++ AAREEVPGRRGYPGYMYTDLA +YERAG I+G KGS+TQ  ILTMP DDITHP PDL+GYITEGQI + R+L  + IYPPINVLPSLSRLM S IGEG
Sbjct:  124 EDFIQTGISTIDGTNTLVRGQKLPIFSGSGLPHNEIALQIARQAKV------------PGSDEPFAVVFAAMGITNEEAQYFMDDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHDMHVLVILTDITNYCEALRQMGAAREEVPGRRGYPGYMYTDLASLYERAGVIKGIKGSVTQFSILTMPGDDITHPIPDLSGYITEGQIVVSRELHRKGIYPPINVLPSLSRLMNSGIGEG 358          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_HALLT (V-type ATP synthase beta chain OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=atpB PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.757e-89
Identity = 159/248 (64.11%), Postives = 199/248 (80.24%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM 750
            EE I+TG+S ID MN++ RGQK+P+FS++G PH+++A QI RQA + +  E  D+  E+G E  FA++F AMG+  E A  F +DFE  G++ER  +F+NLA+DP +ER +TPR+ LTTAEYLA+E   HVLVILTDM++Y +ALRE+ AAREEVPGRRGYPGYMYTDLAQ+YERAGRI+GR GS+TQIPILTMP DD THP PDLTGYITEGQIY+D  L ++ + PPINVLPSLSRLM   IGEG+
Sbjct:  123 EEFIETGVSAIDGMNTLVRGQKLPIFSSSGQPHSQLAMQIARQASVPEEEEGGDD--EEGSE--FAVIFGAMGITAEEANEFMQDFERTGALERSVVFMNLADDPAVERTVTPRMVLTTAEYLAFEKDYHVLVILTDMTNYCEALREIGAAREEVPGRRGYPGYMYTDLAQLYERAGRIQGRDGSVTQIPILTMPGDDDTHPIPDLTGYITEGQIYVDPDLNSQGLQPPINVLPSLSRLMDDGIGEGL 366          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_METJA (V-type ATP synthase beta chain OS=Methanocaldococcus jannaschii GN=atpB PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.294e-89
Identity = 161/246 (65.45%), Postives = 195/246 (79.27%), Query Frame = 1
Query:   10 EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            + IQTGISTID MN++ RGQK+P+FS +GLPHN++AAQI RQA +             GE + FA+VFAAMG+  E A FF  +F + G++ER  +F+NLA+DP IERI+TPRIALT AEYLAYE   HVLVILTDM++Y +ALRE+SAAR EVPGRRGYPGYMYTDLA IYERAGR++GR G+ITQIPILTMP+DDITHP PDLTGYITEGQI + R+L  + IYPP++VLPSLSRL  +  G G
Sbjct:  131 DFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNQLAAQIARQAKV------------RGEGEKFAVVFAAMGITSEEANFFMEEFRKTGALERAVVFINLADDPAIERILTPRIALTVAEYLAYEKDMHVLVILTDMTNYCEALREISAARNEVPGRRGYPGYMYTDLATIYERAGRVKGRTGTITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPVDVLPSLSRLAGNGQGPG 364          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_STRPZ (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=atpB PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.996e-89
Identity = 161/247 (65.18%), Postives = 193/247 (78.14%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            +E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP PDLTGYITEGQI + ++L      PPINVLPSLSRL     GEG
Sbjct:  127 DEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHPIPDLTGYITEGQIILSQELYKNGFRPPINVLPSLSRLKDKGSGEG 361          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_STRPM (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M28 GN=atpB PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.996e-89
Identity = 161/247 (65.18%), Postives = 193/247 (78.14%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            +E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP PDLTGYITEGQI + ++L      PPINVLPSLSRL     GEG
Sbjct:  127 DEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHPIPDLTGYITEGQIILSQELYKNGFRPPINVLPSLSRLKDKGSGEG 361          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_STRPG (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=atpB PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.996e-89
Identity = 161/247 (65.18%), Postives = 193/247 (78.14%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            +E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP PDLTGYITEGQI + ++L      PPINVLPSLSRL     GEG
Sbjct:  127 DEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHPIPDLTGYITEGQIILSQELYKNGFRPPINVLPSLSRLKDKGSGEG 361          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_STRPF (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=atpB PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.996e-89
Identity = 161/247 (65.18%), Postives = 193/247 (78.14%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            +E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP PDLTGYITEGQI + ++L      PPINVLPSLSRL     GEG
Sbjct:  127 DEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHPIPDLTGYITEGQIILSQELYKNGFRPPINVLPSLSRLKDKGSGEG 361          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_STRPD (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=atpB PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.996e-89
Identity = 161/247 (65.18%), Postives = 193/247 (78.14%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            +E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP PDLTGYITEGQI + ++L      PPINVLPSLSRL     GEG
Sbjct:  127 DEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHPIPDLTGYITEGQIILSQELYKNGFRPPINVLPSLSRLKDKGSGEG 361          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_STRPC (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=atpB PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.996e-89
Identity = 161/247 (65.18%), Postives = 193/247 (78.14%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            +E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP PDLTGYITEGQI + ++L      PPINVLPSLSRL     GEG
Sbjct:  127 DEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHPIPDLTGYITEGQIILSQELYKNGFRPPINVLPSLSRLKDKGSGEG 361          
BLAST of CN189684 vs. ExPASy Swiss-Prot
Match: VATB_STRPB (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=atpB PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.996e-89
Identity = 161/247 (65.18%), Postives = 193/247 (78.14%), Query Frame = 1
Query:    7 EEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG 747
            +E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP PDLTGYITEGQI + ++L      PPINVLPSLSRL     GEG
Sbjct:  127 DEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHPIPDLTGYITEGQIILSQELYKNGFRPPINVLPSLSRLKDKGSGEG 361          
The following BLAST results are available for this feature:
BLAST of CN189684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATB_METBU1.345e-8965.59V-type ATP synthase beta chain OS=Methanococcoides... [more]
VATB_HALLT1.757e-8964.11V-type ATP synthase beta chain OS=Halorubrum lacus... [more]
VATB_METJA2.294e-8965.45V-type ATP synthase beta chain OS=Methanocaldococc... [more]
VATB_STRPZ2.996e-8965.18V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPM2.996e-8965.18V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPG2.996e-8965.18V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPF2.996e-8965.18V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPD2.996e-8965.18V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPC2.996e-8965.18V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPB2.996e-8965.18V-type ATP synthase beta chain OS=Streptococcus py... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189684 ID=CN189684; Name=CN189684; organism=Citrus sinensis; type=EST; length=751bp
GAGGCTGAAGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAA
CTCCATTGCTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTC
CCCATAATGAAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAG
CGATTGGAGAAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTT
TGCAATTGTGTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTT
TCAAACGTGATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTT
CTGAATCTGGCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTAT
TGCTCTTACTACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTC
TTGTCATACTGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTG
TCTGCTGCCCGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATAT
GTATACTGATTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTC
GAAAAGGTTCCATCACCCAAATTCCAATATTGACTATGCCAAATGACGAT
ATTACACATCCCACTCCAGATCTTACGGGATATATCACCGAGGGGCAGAT
TTACATTGACAGGCAGCTCCAGAACAGACAGATATATCCTCCGATCAATG
TCCTTCCGTCCCTATCTCGTCTGATGAAGAGTGCTATTGGTGAGGGGATG
A
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