DR908812

Overview
NameDR908812
Unique NameDR908812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908812 vs. ExPASy Swiss-Prot
Match: TCTP_LABRO (Translationally-controlled tumor protein homolog OS=Labeo rohita GN=tpt1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 3 
Query:   69 VDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 371
            VDIV   +LQE  ++DKK +  Y+K ++K +  KL E   +R + F  N     K +L  + + QFF GESM+ DG +    ++E    P  L+  D L+  KC
Sbjct:   69 VDIVLNHKLQET-SYDKKSYTAYIKDYMKAVKAKLQEVAPDRVDPFMANAPAEVKKILGNIKNFQFFTGESMNPDGMIGLLDFREDGVTPYMLFFKDGLEIEKC 171
The following BLAST results are available for this feature:
BLAST of DR908812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
TCTP_LABRO9.685e-1135.58Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16940 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908812 ID=DR908812; Name=DR908812; organism=Citrus sinensis; type=EST; length=576bp
TTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGGGTGTTGAT
GACCAAGCCGTGAAGGTGGTCGACATTGTCGACACATTCAGGCTGCAGGA
GCAACCTGCTTTTGACAAGAAGCAGTTTGTAACATACATGAAGAGATTCA
TCAAGTTGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGATATTTAAG
AAGAATATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGTGACCT
TCAATTCTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCTTGTCTTTG
CTTACTACAAGGAAGGTGCGACCGACCCAACATTTTTGTATATTGCTGAT
GCATTGAAGGAGGTGAAGTGCTAAGCCGGGCTTCGAAGAGGAAGTGCCTG
CTGTAGTTCTAGTTTTAATTATTGCCCGCGGTTATTTTTATGTATCTTTT
GTACTGGTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTATTTTG
ACATAAACAATATGTTTTTCTGCTCCTAATTATTGGGTTTTATGGTTTGA
GATTGAATTACCAAATAAAAAAAAAA
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