CN189638

Overview
NameCN189638
Unique NameCN189638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 63/197 (31.98%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  156 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAII 740
            RA I+EF+AT +F++ +  +++ + K     ST G +  ++ A    + V V     ISGGH+NPA+T G  L  +LSL RALFY + Q LGA+    +++   G  +    A     +A G      +  E   TF L+Y  ++   D KR     HV  +APL +GF +    LA           AR  G A++
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFA-----LASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV 214          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 68/211 (32.23%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  117 LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAII 740
            ++ PG LK      A  AEFI+T +F++    + M   K       +  G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R L Y V Q LG+     +++   G    G+  G   +   G +  + L  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    L            A S G A++
Sbjct:   14 VYHPGALK------AAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTG----GQATGTFGLT--GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV 208          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 68/209 (32.54%), Postives = 105/209 (50.24%), Query Frame = 3
Query:  156 RAGIAEFIATFLFLYISVLTVMGVVK------SNTKCSTVG---IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK----GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA-TDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAII 740
            RA +AEF++TF+F++ +  +++ + K      ++   +T G   +  +A AF   +F  V     +SGGH+NPAVT G  +  +++  RA++Y + Q LGAI    +++    G    G   RLA G   V       +GL  EII TF LVY V+S   D KR +    + I+APL IG  V    L            AR+ G A++
Sbjct:   24 RATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFA--LFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVG--FRLASGVGAV-------NGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALV 217          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.176e-15
Identity = 57/167 (34.13%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  255 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGG------ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAI 737
            +G  G+A AFG  +  + Y   GISGGH NPAV+L L +A +L     + Y V Q LGAI  A ++   + +G+ G  AGG        +   GY+   GL  EII T   +  +  +T +   A        AP+ IGF + L+HL            ARS G A+
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILY-VIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVAL 193          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.842e-15
Identity = 67/197 (34.01%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  156 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA-TDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAII 740
            +A I EFI TFLF++  V + M    S    + VG+  +A A   ++ V++  +AG ISGGH+NPAVTLGL L   +S+ RA  Y + Q L +         F+ +   G +    + +A G +   G+  EII TF L++TV++   D K+ + D   P+L     GF V    LA           ARS G A++
Sbjct:   19 KALIVEFITTFLFVFAGVGSAMAT-DSLVGNTLVGLFAVAVAHAFVVAVMI--SAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAAC-----FLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALV 203          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.848e-15
Identity = 65/205 (31.71%), Postives = 94/205 (45.85%), Query Frame = 3
Query:  129 GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG--ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAI 737
            GE     F+R  + E + TFLF++I V   M    + TK ST G    A A G  + V V  TAG  ISGGH+NPAVTL L +   ++L R+  Y+  Q L +     +++   G      LA   + +A G     G+ AE + TF L++ +++     R      +P   PL  G  V    +A           ARS G A+
Sbjct:   10 GEASEPDFFRGVLGELVLTFLFVFIGVGAAM-TDGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGG-----LATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKL----LPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAV 204          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15
Identity = 57/178 (32.02%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  156 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 662
            RA +AEF +TF+F++    + + +VK   ++  S   +  +A A    +F  V  +  +SGGH+NPAV+ G  +  ++S+ RA++Y + Q LG+I  A V++               N+   G+    G+G       E++ TF L+YTV+ +A D KR A    V  +APL IG  V
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN-----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIV 183          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15
Identity = 64/206 (31.07%), Postives = 95/206 (46.12%), Query Frame = 3
Query:  132 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAIIYNK 749
            E+++  F+R+ I+E +A+F++++I      GV    +  S   +   A A G  +  L  C   ISG HINPAVTL L + R +S  RA  Y+  QC G I GA ++ G    G  G L    +  A      +  G E I TF++V   F +TD  +    +     +   IG A    + A           ARSLG + + NK
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSV--LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSA-ALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCA----YSACCFVSMPYLNPARSLGPSFVLNK 251          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 61/201 (30.35%), Postives = 94/201 (46.77%), Query Frame = 3
Query:  156 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAN-----VVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAII 740
            RA ++EF+AT +F++ +  +V G+ K      T+G +  +A A    +   V  +   SGGH+NPAVT G+ + R++S  RA  Y   Q LGA+    ++          RLA G        + H   +   L  E++ TF LVYTV++    +RS        +APL IG       LA           AR+ G A++
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLL----------RLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALV 215          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 53/172 (30.81%), Postives = 80/172 (46.51%), Query Frame = 3
Query:  255 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV-----------KGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAI 737
            +G+ G+++AFG  +  + Y   GISGGH NPAV+LGL +A ++     + Y++ Q  GAI  A V+            G   A  YG  + G      GY+    L  E++ TF  +  +  +T  +  A        AP+ IG A+ L+HL            ARS G A+
Sbjct:   34 IGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPG------GYSLTAALVTEVVMTFFFLIIILGSTHRRVPAG------FAPIAIGLALTLIHLVSIPVTNTSVNPARSTGQAL 193          
The following BLAST results are available for this feature:
BLAST of CN189638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
TIP31_ORYSJ1.276e-1531.98Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE1.276e-1532.23Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP31_ARATH1.666e-1532.54Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
AQPZ_BRUSU2.176e-1534.13Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
TIP41_ARATH2.842e-1534.01Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP43_MAIZE4.848e-1531.71Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIPA_PHAVU6.332e-1532.02Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
BIB_DROME6.332e-1531.07Neurogenic protein big brain OS=Drosophila melanog... [more]
TIP32_ORYSJ8.270e-1530.35Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
AQPZ2_RHIME8.270e-1530.81Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189638 ID=CN189638; Name=CN189638; organism=Citrus sinensis; type=EST; length=751bp
GAGGCAAAGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGG
CAGCCGATTGGGACGGCGGCTCAGACCCAAGATGGCAAGGACTACGTTGA
ACCCCCACCGGCGCCGCTCTTCGAGCCCGGCGAGCTCAAGTCTTGGTCGT
TTTACAGGGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTAC
ATCTCCGTACTGACAGTGATGGGCGTCGTCAAGTCCAACACCAAGTGCTC
AACCGTCGGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCG
TGCTCGTTTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCG
GTGACACTCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACT
TTTCTACATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTG
TTAAGGGTTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCC
AACGTCGTAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGAT
TATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCA
AACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCAATT
GGGTTCGCTGTGTTTTTGGTTCACTTGGCCACTATCCCAATTACCGGAAC
TGGCATCACCCCAGCGAGGAGTCTTGGAGCTGCAATCATCTACAACAAGG
A
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