CN189638

Overview
NameCN189638
Unique NameCN189638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: AQPZ2_AGRT5 (Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 53/172 (30.81%), Postives = 77/172 (44.77%), Query Frame = 3
Query:  255 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICG-----------AGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAI 737
            +G  G+A AFG  +  + Y   GISGGH NPAV++GL +A +   +  + Y++ Q  GAI             AG+  G   +  YG  + G      GY+    L  EII T   +  +  +T  +  A        AP+ IG A+ L+HL            ARS G A+
Sbjct:   34 IGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPG------GYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQAL 193          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 61/199 (30.65%), Postives = 91/199 (45.73%), Query Frame = 3
Query:  156 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLP-IGFAVFLVHLAXXXXXXXXXXXARSLGAAIIYNK 749
            +A  AEF+AT L+++  V +V+         +   +  IA  F       V  +   SG H NPAVTL   +   +SL RA+ Y+  Q  GA  GA ++ G    G    L  G NVV +  + G  +  E++ T  LV  VF++ D +++       + +P   IG +V L HL            ARS G A+I  K
Sbjct:   22 KALFAEFLATGLYVFFGVGSVLP-----WPVALPSVLQIAITFNLATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALLYGVTPGGIRETL--GVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQT-------LASPAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK 206          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.011e-12
Identity = 62/211 (29.38%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  141 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVL---------VYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPI-LAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAIIY 743
            S +  R  ++EFI+TF F    VL  +G V S+ K     + G    FG +I  +         VY +  +SGGH+NPAVT  + +A ++S+  A+FY   Q + ++    V+K  +             +   G +  +G+ A     FVLVYTVF+A+D +R      +P+ + P+ IGF      LA           A + G+A++Y
Sbjct:   18 SMNALRCYVSEFISTFFF----VLAAVGSVMSSRKLMAGDVSG---PFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLA-----FVLVYTVFTASDPRRG-----LPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVY 211          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.320e-12
Identity = 59/198 (29.80%), Postives = 89/198 (44.95%), Query Frame = 3
Query:  156 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAIIYNK 749
            +A  AEF+AT L+++  V +V+         +   +  +A  F       V  +   SG H NPAVTL   +   +SL RA+ Y+  Q  GA  GA ++ G    G    L  G NVV +  + G  +  E++ T  LV  VF++ D++++             IG +V L HL            ARS G A+I  K
Sbjct:   22 KALFAEFLATGLYVFFGVGSVLP-----WPVALPSVLQVAITFNLATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALLYGVTPGGVRETL--GVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDSRQTLGS------PAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK 206          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 64/206 (31.07%), Postives = 96/206 (46.60%), Query Frame = 3
Query:  156 RAGIAEFIATFLFLYISVLTVMGV----VKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIG---TFVLVYTVFSATDAKRSA----RDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAII 740
            RA  AEF +TFLF++I+V + +          +  S++    +A AFG  +F  V+  A +SGGH+NPAVT    +   +++  A+FY   Q LG+   A +V  ++ AGQ    A     +A   T   G GA I+    TF++VYTV  A D +       +      L  L +G       LA           ARS G A++
Sbjct:   18 RAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTF-ACLVLHYISAGQ----AVPTTRIAVEMT---GFGAGILEGVLTFMVVYTVHVAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVV 213          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 63/217 (29.03%), Postives = 98/217 (45.16%), Query Frame = 3
Query:  108 PAPLFEPGELKSWS--FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA---EIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAIIY 743
            P PL +   L S S  F +  IAEF+ T+  ++    +V+  ++++   + V + GIA  +G  I VL+Y    ISG HINPAVT+      +  L +   Y++ Q +G+   A  ++   G   +   +G  +V       G  L A   E I TF L++ +       R+  +     LA L IG  V L  L             RSLG A++Y
Sbjct:   37 PRPLKKQDSLLSVSVPFLQKLIAEFLGTYFLVFTGCASVVVNMQND---NVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGL-DHDVCSGKHDVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNRAIGE-----LAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPALVY 244          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 60/205 (29.27%), Postives = 87/205 (42.44%), Query Frame = 3
Query:  165 IAEFIATFLFLY------ISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGY----TKGDGLGA----EIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAI 737
            IAEFI TF  +       +    +      NT    +G  G+A AFG  +F   Y    ISGGH NPAV+ GL++ ++   ++   Y+  Q LGAI  +  +      G    L G   +  +G+     +G G  A    E + TF+ +  +   TD    A        AP  IG A+ L+HL            ARS G A+
Sbjct:    5 IAEFIGTFWLVLGGCGSAVFAAFIAAPGGGNTNEFGLGYLGVALAFGLTVFTGAYALGHISGGHFNPAVSFGLWMGKRFPGSQLAPYIGAQVLGAIVASLFIFIVAQGGPNFSLDGSNPLATNGFGDHSPQGYGFLAALLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVAL 203          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12
Identity = 65/213 (30.52%), Postives = 94/213 (44.13%), Query Frame = 3
Query:  120 FEPGELKSWSFYRAGIAEFIATFLFLYISVLTVM-----GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG--ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAI 737
            FE  E+      RA +AE + TFLF++  V   M     G        +T+    IA A    + V    TAG  +SGGH+NPAVT+GL +   ++  RA+ Y+  Q L A   A V+  F+  G    +    + +  G +   GL  E+I TF L++  ++     R    S V  + PL  G  V    LA           ARS G A+
Sbjct:   12 FEHDEIPDVGCVRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLV----TAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLL-ASSAACVLLRFLSGG----MVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPR----SQVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAL 211          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: AQPZ_SHIFL (Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12
Identity = 50/164 (30.49%), Postives = 76/164 (46.34%), Query Frame = 3
Query:  255 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRSARDSHVPI-LAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAI 737
            +G  G+A AFG  +  + +    ISGGH NPAVT+GL+   +      + Y++ Q +G I  A ++   + +G+ G  A  +   ++GY +    G  ++   V V  V SA        A D   P   AP+ IG A+ L+HL            ARS   AI
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOLI (Aquaporin Z OS=Escherichia coli (strain K12) GN=aqpZ PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12
Identity = 50/164 (30.49%), Postives = 76/164 (46.34%), Query Frame = 3
Query:  255 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRSARDSHVPI-LAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAI 737
            +G  G+A AFG  +  + +    ISGGH NPAVT+GL+   +      + Y++ Q +G I  A ++   + +G+ G  A  +   ++GY +    G  ++   V V  V SA        A D   P   AP+ IG A+ L+HL            ARS   AI
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
The following BLAST results are available for this feature:
BLAST of CN189638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
AQPZ2_AGRT54.538e-1330.81Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain... [more]
AQP6_MOUSE5.927e-1330.65Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]
TIP51_ARATH1.011e-1229.38Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
AQP6_RAT1.320e-1229.80Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
TIP51_ORYSJ2.252e-1231.07Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
NIP11_ARATH2.941e-1229.03Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
AQPZ_SYNY32.941e-1229.27Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
TIP41_MAIZE5.017e-1230.52Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
AQPZ_SHIFL5.017e-1230.49Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2[more]
AQPZ_ECOLI5.017e-1230.49Aquaporin Z OS=Escherichia coli (strain K12) GN=aq... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002C24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189638 ID=CN189638; Name=CN189638; organism=Citrus sinensis; type=EST; length=751bp
GAGGCAAAGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGG
CAGCCGATTGGGACGGCGGCTCAGACCCAAGATGGCAAGGACTACGTTGA
ACCCCCACCGGCGCCGCTCTTCGAGCCCGGCGAGCTCAAGTCTTGGTCGT
TTTACAGGGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTAC
ATCTCCGTACTGACAGTGATGGGCGTCGTCAAGTCCAACACCAAGTGCTC
AACCGTCGGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCG
TGCTCGTTTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCG
GTGACACTCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACT
TTTCTACATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTG
TTAAGGGTTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCC
AACGTCGTAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGAT
TATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCA
AACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCAATT
GGGTTCGCTGTGTTTTTGGTTCACTTGGCCACTATCCCAATTACCGGAAC
TGGCATCACCCCAGCGAGGAGTCTTGGAGCTGCAATCATCTACAACAAGG
A
back to top