CN189638

Overview
NameCN189638
Unique NameCN189638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:91..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 61/201 (30.35%), Postives = 91/201 (45.27%), Query Frame = 3
Query:  165 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIF-VLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG-----LGAEIIGTFVLVY-TVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAIIYN 746
            I+E +ATFL ++++        + N + S +G Q +A   GG+I  V++Y T  ISG H+NPAVTL     R     +  FY   Q  GA+C A V+K  +             +   G T   G     L  EI+ TF +++ T   ATD++       V  LA L +G AV +  +            AR+L  A+  N
Sbjct:   58 ISEVVATFLLVFVTCGAASIYGEDNARISQLG-QSVA---GGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVL-----------QPIAVIGTTTPSGPHWHALAIEIVVTFNMMFVTCAVATDSRA------VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN 237          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 65/220 (29.55%), Postives = 98/220 (44.55%), Query Frame = 3
Query:   93 YVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVY-TVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLAXXXXXXXXXXXARSLGAAIIYNK 749
            Y E   A  F P  LK        ++E +ATFL ++   +T      S +  S +   G + A G ++ V++Y    ISG H+NPAVTL   + R     +  FY   Q  GAIC + V+K  +       +     V  H ++    L  E+I TF +++ T+  ATD +       V  LA L +G AV +  +            AR+LG A+  NK
Sbjct:   34 YGEKAIADFFPPHLLKKV------VSEVVATFLLVF---MTCGAAGISGSDLSRISQLGQSIAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAVIHPVDV--IGTTTPVGPHWHS----LVVEVIVTFNMMFVTLAVATDTRA------VGELAGLAVGSAVCITSIFAGAISGGSMNPARTLGPALASNK 232          
BLAST of CN189638 vs. ExPASy Swiss-Prot
Match: AQP2_DUGDU (Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  141 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 452
            S +F RA  +EF+AT LF++  + + +     N   +   +  IA AFG  I  LV     ISG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVFSEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRATFYLAAQLLGAVAGAAIL 99          
The following BLAST results are available for this feature:
BLAST of CN189638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
NIP23_MAIZE9.462e-1130.35Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
NIP21_ORYSJ9.462e-1129.55Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
AQP2_DUGDU9.462e-1138.46Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189638 ID=CN189638; Name=CN189638; organism=Citrus sinensis; type=EST; length=751bp
GAGGCAAAGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGG
CAGCCGATTGGGACGGCGGCTCAGACCCAAGATGGCAAGGACTACGTTGA
ACCCCCACCGGCGCCGCTCTTCGAGCCCGGCGAGCTCAAGTCTTGGTCGT
TTTACAGGGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTAC
ATCTCCGTACTGACAGTGATGGGCGTCGTCAAGTCCAACACCAAGTGCTC
AACCGTCGGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCG
TGCTCGTTTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCG
GTGACACTCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACT
TTTCTACATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTG
TTAAGGGTTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCC
AACGTCGTAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGAT
TATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCA
AACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCAATT
GGGTTCGCTGTGTTTTTGGTTCACTTGGCCACTATCCCAATTACCGGAAC
TGGCATCACCCCAGCGAGGAGTCTTGGAGCTGCAATCATCTACAACAAGG
A
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