DR908811

Overview
NameDR908811
Unique NameDR908811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_SCHPO (Vacuolar protein sorting-associated protein 29 OS=Schizosaccharomyces pombe GN=vps29 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.704e-37
Identity = 72/162 (44.44%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    5 QKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFD----VNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            +KF+ +L+PGKI  IIC GNL+   V++YLK +C DL + +G +D  S+ P    +T+G FK+G  +GH V+P    ++L++L R++D DIL+ G TH+F AY+ +G   +NPGSATGA +    +    + PSFVLMD+ G  +++YVY + DGEV+V+K+
Sbjct:   20 EKFRQLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVKGAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKFAAYELDGCFFVNPGSATGAPNVSAVEDDEKIVPSFVLMDVQGAVLILYVYRIFDGEVRVEKM 181          
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: PEP11_YEAST (Vacuolar protein sorting-associated protein 29 OS=Saccharomyces cerevisiae GN=VPS29 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.631e-16
Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = 2
Query:    2 PQKFKSML-VPGKIQHIICTGNLSIKEVHDYLK---SLCPDLHVTRGEYD-------------EDSR----YPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSS---FTFDVNPS 394
            P KFK +L VP KI  +   GN +  + +D+LK    +  ++ + RGE+D             ++SR     P    +  G  K+G C G+ V+P  D  SL  L RQLDVDIL+ G TH  +AY  EG   +NPGS TGA+++     FDV  S
Sbjct:   19 PVKFKKLLSVPDKISQVALLGNST--KSYDFLKFVNQISNNITIVRGEFDNGHLPSTKKDKASDNSRPMEEIPMNSIIRQGALKIGCCSGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFFVNPGSCTGAFNTDWPIVFDVEDS 171          
The following BLAST results are available for this feature:
BLAST of DR908811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
VPS29_SCHPO2.704e-3744.44Vacuolar protein sorting-associated protein 29 OS=... [more]
PEP11_YEAST2.631e-1637.42Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16939 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-29_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908811 ID=DR908811; Name=DR908811; organism=Citrus sinensis; type=EST; length=576bp
GCCCCAAAAGTTCAAATCTATGCTCGTTCCTGGAAAAATTCAGCACATCA
TTTGTACTGGCAATCTCTCTATCAAAGAAGTCCATGATTATTTGAAGAGT
CTTTGTCCTGATTTGCATGTCACTCGAGGTGAATATGATGAAGATTCACG
TTATCCCGAAACTAAGACACTCACCATTGGGCAATTCAAGCTTGGAATCT
GCCATGGTCATCAGGTTATTCCATGGGGGGACTTGGATTCGCTGGCAATG
CTGCAAAGGCAGTTGGATGTGGACATCCTTGTGACTGGTCATACCCATCA
GTTCAAAGCCTACAAACATGAAGGTGGTGTTGTTATAAATCCTGGCTCTG
CAACTGGTGCCTACAGTAGCTTTACATTTGATGTAAACCCAAGCTTTGTA
CTCATGGACATTGATGGTCTGCGAGTTGTGGTTTATGTATACGAATTAAT
TGACGGTGAAGTAAAGGTTGACAAAATTTGATTTTAAGAAGACTGCCACT
ACTCGATTAGCACACTGATTCAGCACACTGCATCCTTGACTTTGTTGGAC
TAATTGCTGAGAACTTTTATGTAATG
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