CN189627

Overview
NameCN189627
Unique NameCN189627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: FWA_ARATH (Homeobox-leucine zipper protein HDG6 OS=Arabidopsis thaliana GN=HDG6 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.260e-13
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = -2
Query:  405 MLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 773
            ML+LQE   DA+G++VVYAPV+  ++ +V  G +S  V  LPSGF+IVPDG +                         LLT   QILV   PTA L   +V++V  L++ T+ KIK+AL  ++
Sbjct:  577 MLVLQEIWNDASGAMVVYAPVETNSIELVKRGENSDSVKFLPSGFSIVPDGVNG-------------SYHRGNTGGGCLLTFGLQILVGINPTAALIQGTVKSVETLMAHTIVKIKSALDLQT 686          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: HDG8_ARATH (Homeobox-leucine zipper protein HDG8 OS=Arabidopsis thaliana GN=HDG8 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = -2
Query:  411 MLILQETCTDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLP--TAKLTVESVETVNNLISCTVQKIKAALQC 773
            ML+LQ+   DA G ++VYAP+D+  MH  ++G  D +++ +LPSGF I  DG  S                       +LLTVAFQILV+     + ++  +SV+TV+ LIS T+Q+IK  L C
Sbjct:  590 MLMLQDCYMDALGGMIVYAPMDMATMHFAVSGEVDPSHIPILPSGFVISSDGRRS-----------------TVEDGGTLLTVAFQILVSGKANRSREVNEKSVDTVSALISSTIQRIKGLLNC 696          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: HDG9_ARATH (Homeobox-leucine zipper protein HDG9 OS=Arabidopsis thaliana GN=HDG9 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.393e-12
Identity = 52/126 (41.27%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  408 MLILQETCTDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNS---LPTAKLTVESVETVNNLISCTVQKIKAALQCE 773
            ++ILQ++  DA G +V YAP+D+      ++G  D   + +LPSGF I  DG  S G                      LLTVAFQILV+     P   L V S  TVN LIS TVQ+IKA L+CE
Sbjct:  608 LMILQDSFKDALGGMVAYAPMDLNTACAAISGDIDPTTIPILPSGFMISRDGRPSEGEAEGGSYT--------------LLTVAFQILVSGPSYSPDTNLEV-SATTVNTLISSTVQRIKAMLKCE 718          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: ROC9_ORYSJ (Homeobox-leucine zipper protein ROC9 OS=Oryza sativa subsp. japonica GN=ROC9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.851e-11
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = -2
Query:  405 ILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGF-AIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVN-SLPTAKLTVESVETVNNLISCTVQKIKAALQCES 767
            +LQ+ CT+   S + YA +D  A+  V+ G DS+ V LLP GF +++PDG +S+  +                   SL+TVAFQ+  + S   A L+ +SVE V  L+S T++ I+ AL C+S
Sbjct:  694 VLQDVCTNPCESTIAYAAIDAAALQPVIAGHDSSGVHLLPCGFISVMPDGLESKPAV-----ITASRRGGEASGAGSLVTVAFQVPASPSAAAATLSPDSVEAVTVLVSSTLRNIRKALGCDS 811          
The following BLAST results are available for this feature:
BLAST of CN189627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FWA_ARATH1.260e-1339.02Homeobox-leucine zipper protein HDG6 OS=Arabidopsi... [more]
HDG8_ARATH3.665e-1338.71Homeobox-leucine zipper protein HDG8 OS=Arabidopsi... [more]
HDG9_ARATH1.393e-1241.27Homeobox-leucine zipper protein HDG9 OS=Arabidopsi... [more]
ROC9_ORYSJ5.851e-1136.59Homeobox-leucine zipper protein ROC9 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189627 ID=CN189627; Name=CN189627; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTTTTTTTTTTGCACAAAGGAATACTTCAAACTTCACTTTCTAG
TTTTGGTTTTTTTGACAATTCATAAAGGGGGTTGACCCTGAGTCAATACC
NCGAACCACCACCCCTTGCCTTGTGTTAAGAATAGTCTCTGCTCGAGTCC
GTGACTCAGCCCCATCCTCATCACCATGCAAGGAGTTTCCACGCGCGGTT
CGTTCTTGACTCAACACCCCCGAAGCAAAGCAAACACACTGTCACACGCG
CCCACGTACCAAAGCTGTCTCTCTCTCTCTCTCTCTCTGTTCACCACAAT
TCACAAGCCACGTGATTAGCTACAATTAACCGTAGCCATGCACAAAGCAA
AACACCCCATCGTGTCAAGTTAAAAAACCAAACACCAACTCCATTATCGT
ATCAGCTTTCACATTGAAGAGCGGCCTTGATCTTCTGAACAGTGCATGAT
ATTAGATTGTTGACCGTCTCCACAGATTCTACCGTAAGCTTGGCCGTCGG
AAGACTATTCACCAAGATTTGGAAGGCCACTGTTAAAAGCGAGCCACCCA
CTCTCTGTGACCCACCGTTGCTCCCATTCCCACTTGTGGGGCCATTAGCC
AGGGGCCCTCGTGAGTCTGGACCATCTGGAACAATTGCAAATCCAGAAGG
AAGGAGAGCCACGTAGGCAGAATCACCACCGTTCATCACCACGTGCATGG
CCGGGATGTCAACGGGCGCGTAGACGACAAGCGACCCAGCGGCGTCTGTG
CATGTCTCCTGTAATATCAACATGCTG
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