CN189623 | Citrus Genome Database

Overview


Name	CN189623
Unique Name	CN189623
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	813

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6215	contig	Csv1_Contig6215:86..898.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN189623 vs. ExPASy Swiss-Prot
Match: Y837_STAAB (Uncharacterized protein SAB0837 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0837 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.553e-25
Identity = 72/180 (40.00%), Postives = 99/180 (55.00%), Query Frame = 1

Query:   76 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVG 609
            ++A GRNY  HA EL + V K  V F K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I TGTP GVG
Sbjct:   95 VIAFGRNYKDHANELNHEVEKLYV-FTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVG 269

[Close]

BLAST of CN189623 vs. ExPASy Swiss-Prot
Match: Y829_STAAN (Uncharacterized protein SA0829 OS=Staphylococcus aureus (strain N315) GN=SA0829 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.553e-25
Identity = 72/180 (40.00%), Postives = 99/180 (55.00%), Query Frame = 1

Query:   76 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVG 609
            ++A GRNY  HA EL + V K  V F K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I TGTP GVG
Sbjct:   95 VIAFGRNYKDHANELNHEVEKLYV-FTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVG 269

[Close]

BLAST of CN189623 vs. ExPASy Swiss-Prot
Match: Y930_STAAR (Uncharacterized protein SAR0930 OS=Staphylococcus aureus (strain MRSA252) GN=SAR0930 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.034e-24
Identity = 70/180 (38.89%), Postives = 98/180 (54.44%), Query Frame = 1

Query:   76 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVG 609
            ++A GRNY  HA EL + V +  V F K  SS  G+   I     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I TGTP GVG
Sbjct:   95 VIAFGRNYKDHANELNHEVERLYV-FTKAASSLTGDNAKIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVG 269

[Close]

BLAST of CN189623 vs. ExPASy Swiss-Prot
Match: Y1806_STAS1 (Uncharacterized protein SSP1806 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1806 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.122e-23
Identity = 68/180 (37.78%), Postives = 99/180 (55.00%), Query Frame = 1

Query:   76 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVG 609
            ++A GRNY  HA EL + V +  V F K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ Q++   A L  ++  G     P+   ++ K  +P P ++ +   V+ +IRQ G+T  MI  I  LI  IS  + L  GD+I TGTP GVG
Sbjct:   95 VIAFGRNYQDHANELNHEVQRLYV-FTKAASSLTGDNSTIPNHKDITDQLDYEGELGIVIGKSGEKIPKGLALDYVYGYTIINDITDRKAQNAQDQAFLSKSLTGG----CPVGPYIVTKDELPTPEDVNIVTKVNNDIRQDGNTGQMILKIDELIEEISKYVALHPGDIIATGTPAGVG 269

[Close]

BLAST of CN189623 vs. ExPASy Swiss-Prot
Match: Y1982_STAHJ (Uncharacterized protein SH1982 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1982 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.465e-23
Identity = 68/180 (37.78%), Postives = 98/180 (54.44%), Query Frame = 1

Query:   76 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVG 609
            ++A GRNY  HA EL + V +  V F K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DY+ GY +  D+T R+ Q+    A L  ++  G     P+   ++ K  +P P N+ +   V+ +IRQ G+T  MI  I  LI  IS  + L  GD+I TGTP GVG
Sbjct:   95 VIAFGRNYQDHASELNHEVQRLYV-FTKAASSLTGDESTIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYIYGYTIINDITDRKAQNEQDQAFLSKSLTGG----CPMGPYIVTKDELPTPENVNIVTKVNNDIRQDGNTSQMINKIDDLIEEISKYVALHPGDIIATGTPAGVG 269

[Close]

BLAST of CN189623 vs. ExPASy Swiss-Prot
Match: Y665_STAES (Uncharacterized protein SE_0665 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0665 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.263e-23
Identity = 70/179 (39.11%), Postives = 96/179 (53.63%), Query Frame = 1

Query:   76 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVG 609
            ++A GRNY  HA EL + V    V F K  SS  G+  TI     + + L +E EL +VIG+    +P   A+DY+ GY +  D+T R  QSS   A L  ++  G     P   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I TGTP GVG
Sbjct:   95 VIAFGRNYEDHASELNHEVDSLYV-FTKAASSLTGDEATIPNHKDITEQLDYEGELGIVIGKSGEKIPRGLALDYIYGYTIINDITDRTAQSSHDQAFLSKSLT-GACPMGPY--IVTKDELPAPENVNIVTKVNNEIRQDGNTGEMILKIDELIEKISKYVALHPGDIIATGTPAGVG 269

[Close]

BLAST of CN189623 vs. ExPASy Swiss-Prot
Match: Y556_STAEQ (Uncharacterized protein SERP0556 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0556 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.263e-23
Identity = 70/179 (39.11%), Postives = 96/179 (53.63%), Query Frame = 1

Query:   76 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVG 609
            ++A GRNY  HA EL + V    V F K  SS  G+  TI     + + L +E EL +VIG+    +P   A+DY+ GY +  D+T R  QSS   A L  ++  G     P   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I TGTP GVG
Sbjct:   95 VIAFGRNYEDHASELNHEVDSLYV-FTKAASSLTGDEATIPNHKDITEQLDYEGELGIVIGKSGEKIPRGLALDYIYGYTIINDITDRTAQSSHDQAFLSKSLT-GACPMGPY--IVTKDELPAPENVNIVTKVNNEIRQDGNTGEMILKIDELIEKISKYVALHPGDIIATGTPAGVG 269

The following BLAST results are available for this feature:

BLAST of CN189623 vs. ExPASy Swiss-Prot

BLAST of CN189623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47


Match Name	E-value	Identity	Description
Y837_STAAB	4.553e-25	40.00	Uncharacterized protein SAB0837 OS=Staphylococcus ...	[more]
Y829_STAAN	4.553e-25	40.00	Uncharacterized protein SA0829 OS=Staphylococcus a...	[more]
Y930_STAAR	5.034e-24	38.89	Uncharacterized protein SAR0930 OS=Staphylococcus ...	[more]
Y1806_STAS1	1.122e-23	37.78	Uncharacterized protein SSP1806 OS=Staphylococcus ...	[more]
Y1982_STAHJ	1.465e-23	37.78	Uncharacterized protein SH1982 OS=Staphylococcus h...	[more]
Y665_STAES	3.263e-23	39.11	Uncharacterized protein SE_0665 OS=Staphylococcus ...	[more]
Y556_STAEQ	3.263e-23	39.11	Uncharacterized protein SERP0556 OS=Staphylococcus...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0002C15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C15, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN189623 ID=CN189623; Name=CN189623; organism=Citrus sinensis; type=EST; length=813bp
CCCCAGATCAGAATCGCTTAAGCGATGGCGACTGCATCATCGGCCGTACA
AAAGCTCATTCAAGCAGGCACCAAGATCGTGGCCGTTGGCCGTAACTATG
CGGCTCACGCCAAAGAGCTCGGCAACGCCGTGCCCAAGGAGCCGGTTTTG
TTTCTCAAACCGACGTCGTCTTATTTAGGAAACGGAGGGACCATCGAGGT
ACCTCATCCCCTGGATTCGCTTCATCATGAAGTGGAGCTTGCAGTCGTGA
TCGGACAGAAAGCTCGAGATGTGCCTGAAACCACTGCCATGGACTATGTT
GGAGGCTATGCAGTGGCGCTTGATATGACTGCAAGGGAAATCCAATCTTC
TGCCAAGTCTGCAGGTCTTCCGTGGACAGTGGCTAAAGGGCAGGACACCT
TCACACCAATTAGCTCTGTCCTACCAAAGTCAGCAGTGCCTGACCCTCAC
AACTTGGAACTATGGTTAACGGTTGATGGAGAGATTCGACAGAAAGGCTC
CACTAAGGATATGATTTTTATGATACCATATCTAATTAGCCACATAAGTT
CAATTATGACACTTTTTGAAGGAGATGTCATATTAACAGGCACTCCACAG
GGCGTTGGTCCTGTAAAAGTTGGTCAAAAGATAACAGCTGGTATAACGGG
CCTCCTGGATGTACACTTTGATATTGAAAAACGCCGAAGGCCAGGAAGTG
CTTGAACTTATGATGTCCACTCCACTGCAACTGCATTTCAAGCAAAATGT
ACACAAAATTTTCGAGGTGACCCTGACTCATAGCCCTAGCCCCATTTGGC
CATTGCCATCCCC