CN189617

Overview
NameCN189617
Unique NameCN189617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:158..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189617 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 63/126 (50.00%), Postives = 94/126 (74.60%), Query Frame = -1
Query:  280 KNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 657
            KNG++VIK  PCK+V++STSKTGKHGHAK +   IDIF GKK E+I PS+HN D P+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  +I     EGK+ +V+V+S++G+E + ++K
Sbjct:   32 KNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
BLAST of CN189617 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.934e-29
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = -1
Query:  280 KNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL-TETGNTKDDLRLPTDENLLSQIKDGFAEGK-DLVVTVMSSMGEEQICALK 657
            KN +++IK RPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN D P V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  QI+D + + +  ++V V+S++GEE I   K
Sbjct:   31 KNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWK 156          
BLAST of CN189617 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 65/128 (50.78%), Postives = 90/128 (70.31%), Query Frame = -1
Query:  280 KNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL-TETGNTKDDLRLPTDENLLSQIKDGFAEGK-DLVVTVMSSMGEEQICALK 657
            KN +++I+ RPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN D P V R +Y L+ I EDGF SL+  E+   KDDL++P + +L + I++   + +  ++V V+++ GEE I   K
Sbjct:   31 KNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMP-EGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          
BLAST of CN189617 vs. ExPASy Swiss-Prot
Match: IF5A_METKA (Translation initiation factor 5A OS=Methanopyrus kandleri GN=eif5a PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = -1
Query:  277 KNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKD 657
            K  YI+I + PCK+VE +TS  GKHG AK   V + +F+GKK     P     D P + R   Q++    D    +  ET  T  +++ P DE L SQ++ G       +V  M + G+ +I  +K+
Sbjct:   15 KGKYIMIDDEPCKIVEYTTSSPGKHGSAKARIVAVGLFDGKKRTLTKPVDAKVDVPVIERKTAQVVSDMGDTVQLMDMETYET-FEVQKPEDEELASQLEPG------TMVEYMEAAGKRKIVGIKE 134          
BLAST of CN189617 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = -1
Query:  280 YIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 648
            +IVI   PCKVVEV  SKTGKHG AK   VGI  F+G K   +VP+    + P + +   Q++    D  V L+     +  ++ +P +E + S++ +G      + V V   MG  +I  ++
Sbjct:   16 FIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTAQVVAFVGDN-VQLMNLEDYSTFEIPMPQEEEIKSKLSEG------VEVEVWEVMGRHKIMRVR 131          
BLAST of CN189617 vs. ExPASy Swiss-Prot
Match: IF5A_METS5 (Translation initiation factor 5A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = -1
Query:  280 KNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 657
            +  YIVI   PC+VVEV+ +KTGKHG AK + + + IF G K   + P     + P + +   Q+I    D    +  ET  T  ++ +PT+E++ S+IK      KD  V     MG ++I  +K
Sbjct:   13 EGSYIVIDGEPCRVVEVTKAKTGKHGSAKANIIAVSIFTGAKKTLMAPVDSTVEVPIIEKRMGQVISNVGDKVQIMDLETYET-FEIDMPTEEDVASKIK------KDAEVEYWEVMGRKKIVRVK 131          
BLAST of CN189617 vs. ExPASy Swiss-Prot
Match: IF5A_PYRHO (Translation initiation factor 5A OS=Pyrococcus horikoshii GN=eif5a PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 39/126 (30.95%), Postives = 63/126 (50.00%), Query Frame = -1
Query:  271 YIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG 648
            YI+I + PC++V ++ S  GKHG AK     + IF+GK    + P+S   D P + +   Q+I I+ D    +  ET  T     +P D  +  +I+D   EG  + V    ++G  +I  +K  G
Sbjct:   17 YIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYET---FEVPIDTGVADEIRDQLKEG--INVEYWETLGRIKIMRIKGEG 137          
The following BLAST results are available for this feature:
BLAST of CN189617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IF5A_DICDI1.107e-3050.00Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A2_CAEEL7.934e-2953.91Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL1.654e-2650.78Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_METKA3.956e-1233.86Translation initiation factor 5A OS=Methanopyrus k... [more]
IF5A_THEPD8.813e-1233.33Translation initiation factor 5A OS=Thermofilum pe... [more]
IF5A_METS51.151e-1134.13Translation initiation factor 5A OS=Metallosphaera... [more]
IF5A_PYRHO7.461e-1130.95Translation initiation factor 5A OS=Pyrococcus hor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189617 ID=CN189617; Name=CN189617; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTTTTTTAATAAATAGTAAAATATATATAAGTCCGACTTGCTGT
CAACATAAATTTCGTTCAACAGGAGATTGACCACACCTGGCTTTCTTTCC
ACTTCCTTTATCACAAGCACGACGATATTTTAATACACAGCCAAAATACT
ATCTTAATGGAAGTTTGTTGTGGACATGGATAGTAGATAGTCTCCATGTT
GGCAACATAAGAAAGAGTTCTCCTGCTATCAGCCAAAGCTAATGCCATGG
GATTATAGTTAATTCTTAGGACCAATGTCCTTAAGGGCACAGATCTGCTC
CTCTCCCATTGACGACATAACGGTCACCACAAGGTCTTTTCCTTCAGCAA
ACCCATCTTTAATCTGGCTAAGCAGATTTTCATCGGTAGGAAGCCTCAGA
TCATCCTTGGTGTTTCCGGTTTCAGTTAAAAGGCTCACAAAACCATCTTC
GGATATATCAATCAGCTGATAGTCAGTGCGAGTAACATGGGGAGCATCAC
AATTGTGGGAGGAAGGCACAATATCTTCAAGCTTCTTTCCATTAAATATA
TCAATTCCCACAAAGTGGCACTTGGCATGTCCATGCTTGCCAGTCTTTGA
AGTGGAAACTTCAACAACCTTGCAAGGACGATTTTTGATGACAATATAAC
CATTCTT
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