CN189613

Overview
NameCN189613
Unique NameCN189613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: CYSNC_RHOBA (Bifunctional enzyme cysN/cysC OS=Rhodopirellula baltica GN=cysNC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.543e-14
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            K +RE+GITID+A   F T +    + D PGH  + +NM TG S AD A+++ID+  G          QTR H+ +   LG++ ++   NKMD     YS+
Sbjct:   83 KEEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASSADLAIILIDARHGVLT-------QTRRHSFIVSLLGIRHVVVAVNKMDIDGVDYSE 176          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_THET2 (Elongation factor Tu OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.239e-14
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +R RGITI+ A  ++ET + + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D
Sbjct:   57 ERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVD 140          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_THEAQ (Elongation factor Tu OS=Thermus aquaticus GN=tuf PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.239e-14
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +R RGITI+ A  ++ET + + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D
Sbjct:   57 ERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVD 140          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_STRAU (Elongation factor Tu OS=Streptomyces aureofaciens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.239e-14
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +R+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   58 ERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_SPHAL (Elongation factor Tu OS=Sphingopyxis alaskensis GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.239e-14
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +RERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QT+EH LLA  +GV  M+   NK+D
Sbjct:   57 ERERGITISTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTKEHILLAKQVGVPTMVVFLNKVD 140          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_RICAH (Elongation factor Tu OS=Rickettsia akari (strain Hartford) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.239e-14
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            ++ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D
Sbjct:   56 EKERGITISTAHVEYETKNRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPML-------QTREHILLAKQVGVPAMVVFLNKVD 139          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_PROMP (Elongation factor Tu OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.239e-14
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +RERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   56 ERERGITINTAHVEYETAERHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCD 139          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_MOOTA (Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.239e-14
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +RERGITI  A  ++ET + +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D
Sbjct:   56 ERERGITIATAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVD 139          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_HELMI (Elongation factor Tu OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.239e-14
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +RERGITI+ A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   56 ERERGITINTAHVEYETDNRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVWLNKAD 139          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_FERNB (Elongation factor Tu OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.239e-14
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +R RGITI+I   +++T + +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK+D
Sbjct:   56 ERARGITINITHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKVD 139          
The following BLAST results are available for this feature:
BLAST of CN189613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYSNC_RHOBA5.543e-1437.62Bifunctional enzyme cysN/cysC OS=Rhodopirellula ba... [more]
EFTU_THET27.239e-1442.86Elongation factor Tu OS=Thermus thermophilus (stra... [more]
EFTU_THEAQ7.239e-1442.86Elongation factor Tu OS=Thermus aquaticus GN=tuf P... [more]
EFTU_STRAU7.239e-1442.86Elongation factor Tu OS=Streptomyces aureofaciens ... [more]
EFTU_SPHAL7.239e-1442.86Elongation factor Tu OS=Sphingopyxis alaskensis GN... [more]
EFTU_RICAH7.239e-1443.96Elongation factor Tu OS=Rickettsia akari (strain H... [more]
EFTU_PROMP7.239e-1442.86Elongation factor Tu OS=Prochlorococcus marinus su... [more]
EFTU_MOOTA7.239e-1442.86Elongation factor Tu OS=Moorella thermoacetica (st... [more]
EFTU_HELMI7.239e-1443.96Elongation factor Tu OS=Heliobacterium modesticald... [more]
EFTU_FERNB7.239e-1445.05Elongation factor Tu OS=Fervidobacterium nodosum (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189613 ID=CN189613; Name=CN189613; organism=Citrus sinensis; type=EST; length=306bp
CAAGGCTGATCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGT
TCGAGACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGT
GACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGT
CCTTATCATTGACTCTACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGG
ATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAG
CAGATGATTTGCTGCTGTAACAAGATGGATGCCACCACCCCCAAGTACTC
AAAGGC
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