CN189613

Overview
NameCN189613
Unique NameCN189613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:289..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_UREPA (Elongation factor Tu OS=Ureaplasma parvum GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 2
Query:    8 DRERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 289
            +RERGITI+ +  ++ET TR+Y  V D PGH D++KNMITG +Q D A+L+I ++ G          QT+EH LLA  +GV +++   NK D  T
Sbjct:   56 ERERGITINASHVEYETKTRHYAHV-DCPGHADYVKNMITGAAQMDGAILVIAASDGVM-------AQTKEHILLARQVGVPKIVVFLNKCDFMT 142          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_UREP2 (Elongation factor Tu OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 2
Query:    8 DRERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 289
            +RERGITI+ +  ++ET TR+Y  V D PGH D++KNMITG +Q D A+L+I ++ G          QT+EH LLA  +GV +++   NK D  T
Sbjct:   56 ERERGITINASHVEYETKTRHYAHV-DCPGHADYVKNMITGAAQMDGAILVIAASDGVM-------AQTKEHILLARQVGVPKIVVFLNKCDFMT 142          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            ++ RGITI+ A  ++ET + +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D
Sbjct:   56 EKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAMP-------QTKEHILLARQVGVPSIVVFLNKVD 139          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_STRCJ (Elongation factor Tu OS=Streptomyces cinnamoneus GN=tuf PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +R+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA   GV  ++   NK D
Sbjct:   58 ERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQSGVPYIVVALNKAD 141          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +RERGITI  A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D
Sbjct:   56 ERERGITISTAHVEYQTKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVD 139          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_SALTO (Elongation factor Tu OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            ++ RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:   58 EKARGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYIVVALNKSD 141          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_SALAI (Elongation factor Tu OS=Salinispora arenicola (strain CNS-205) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            ++ RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:   58 EKARGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYIVVALNKSD 141          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_PROMS (Elongation factor Tu OS=Prochlorococcus marinus (strain AS9601) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +RERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   56 ERERGITINTAHVEYETEGRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCD 139          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_PROMM (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9313) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +RERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   56 ERERGITINTAHVEYETDGRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCD 139          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EFTU_PROMA (Elongation factor Tu OS=Prochlorococcus marinus GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 DRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            +RERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   56 ERERGITINTAHVEYETDGRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCD 139          
The following BLAST results are available for this feature:
BLAST of CN189613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_UREPA1.613e-1345.26Elongation factor Tu OS=Ureaplasma parvum GN=tuf P... [more]
EFTU_UREP21.613e-1345.26Elongation factor Tu OS=Ureaplasma parvum serovar ... [more]
EFTU_THEEB1.613e-1340.66Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_STRCJ1.613e-1342.86Elongation factor Tu OS=Streptomyces cinnamoneus G... [more]
EFTU_STIAU1.613e-1341.76Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]
EFTU_SALTO1.613e-1342.86Elongation factor Tu OS=Salinispora tropica (strai... [more]
EFTU_SALAI1.613e-1342.86Elongation factor Tu OS=Salinispora arenicola (str... [more]
EFTU_PROMS1.613e-1342.86Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROMM1.613e-1342.86Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROMA1.613e-1342.86Elongation factor Tu OS=Prochlorococcus marinus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189613 ID=CN189613; Name=CN189613; organism=Citrus sinensis; type=EST; length=306bp
CAAGGCTGATCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGT
TCGAGACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGT
GACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGT
CCTTATCATTGACTCTACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGG
ATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAG
CAGATGATTTGCTGCTGTAACAAGATGGATGCCACCACCCCCAAGTACTC
AAAGGC
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