CN189613

Overview
NameCN189613
Unique NameCN189613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.504e-38
Identity = 76/101 (75.25%), Postives = 86/101 (85.15%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFET +Y  T+IDAPGHRDFIKNMITGTSQAD A+L+I S  G FEAGIS++GQTREHALLA+TLGVKQMI  CNKMD     +S+
Sbjct:   64 KAERERGITIDIALWKFETEKYSFTIIDAPGHRDFIKNMITGTSQADLAILVIASPPGEFEAGISQNGQTREHALLAYTLGVKQMIVACNKMDDKNVNWSQ 164          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.504e-38
Identity = 76/101 (75.25%), Postives = 86/101 (85.15%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDI+LWKFET + + T+IDAPGHRDFIKNMITGTSQAD A+L+I S  G FEAG SK+GQTREHALLA TLGVKQMI CCNKMD  +  YS+
Sbjct:   64 KAERERGITIDISLWKFETRKDFFTIIDAPGHRDFIKNMITGTSQADVAILVIASGAGEFEAGYSKNGQTREHALLANTLGVKQMIVCCNKMDDKSVNYSE 164          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.601e-37
Identity = 75/101 (74.26%), Postives = 87/101 (86.14%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDI+LWKFET++YY T+IDAPGHRDFIKNMITGTSQAD A+LI+ + TG FEAGISK+GQTREH LL++TLGVKQMI   NKMDA   K  +
Sbjct:   64 KAERERGITIDISLWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVAAGTGEFEAGISKNGQTREHILLSYTLGVKQMIVGVNKMDAIQYKQER 164          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.356e-36
Identity = 74/101 (73.27%), Postives = 83/101 (82.18%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            K +RERGITI+IALWKFET +Y  T+IDAPGHRDFIKNMITGTSQAD A+L++ +  G FEAGISKDGQTREHA LA TLG+K MI C NKMD    KYSK
Sbjct:   44 KDERERGITINIALWKFETKKYIVTIIDAPGHRDFIKNMITGTSQADVAILVVAAGQGEFEAGISKDGQTREHATLANTLGIKTMIICVNKMDDGQVKYSK 144          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.152e-36
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 280
            KA+RERGITIDIALW FET +   T+IDAPGHRDFIKNMITGTSQAD A+LII S  G FEAGISK+GQTREHALLAFT+GVKQMI   NKMD
Sbjct:   64 KAERERGITIDIALWNFETAKSVFTIIDAPGHRDFIKNMITGTSQADAAILIIASGQGEFEAGISKEGQTREHALLAFTMGVKQMIVAVNKMD 156          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.788e-36
Identity = 72/101 (71.29%), Postives = 85/101 (84.16%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFET RY+ TVIDAPGH+DFIKNMITGTSQAD A+L++ +  GGF+   SK+GQT+EH LLAFTLGVKQ++   NKMD  T KYS+
Sbjct:   64 KAERERGITIDIALWKFETPRYFFTVIDAPGHKDFIKNMITGTSQADVALLVVPADVGGFDGAFSKEGQTKEHVLLAFTLGVKQIVVGVNKMD--TVKYSE 162          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.832e-33
Identity = 64/101 (63.37%), Postives = 80/101 (79.21%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            K +RERG+TID+   KFET +YY T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAG+S +GQTREH +LA T+G+ Q+I   NKMDAT P YSK
Sbjct:   64 KEERERGVTIDLTFVKFETKKYYFTIIDAPGHRDFVKNMITGASQADAAILVVSARRGEFEAGMSAEGQTREHLILAKTMGIDQLIVAVNKMDATEPPYSK 164          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.393e-33
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALW+FET +Y+ TVIDAPGHRDFIKNMITGTSQAD A+L++ +    FE   SK+GQTREHALLAFTLGV+QMI   NKMD    K S+
Sbjct:   64 KAERERGITIDIALWQFETPKYHYTVIDAPGHRDFIKNMITGTSQADVALLVVPADR--FEGAFSKEGQTREHALLAFTLGVRQMIVGINKMDTCEYKQSR 162          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.963e-33
Identity = 64/101 (63.37%), Postives = 80/101 (79.21%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            K +RERG+TID+   KFET +YY T+IDAPGHRDFIKNMITG SQAD A+L++ +  G FEAG+S +GQTREH LLA T+G+ Q+I   NKMDAT P +S+
Sbjct:   65 KEERERGVTIDLTFMKFETPKYYFTIIDAPGHRDFIKNMITGASQADAAILVVSARPGEFEAGMSAEGQTREHILLAKTMGIDQIIVAVNKMDATEPPWSE 165          
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.094e-33
Identity = 62/101 (61.39%), Postives = 81/101 (80.20%), Query Frame = 2
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            K +RERG+TI ++  KFET +Y+ T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAG+S +GQTREHA+LA T+G+ Q+I   NKMDAT P YS+
Sbjct:   65 KEERERGVTISLSYMKFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSAEGQTREHAILARTMGINQLIVAINKMDATEPPYSE 165          
The following BLAST results are available for this feature:
BLAST of CN189613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PORYE5.504e-3875.25Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_BLAHO5.504e-3875.25Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A_ENTHI1.601e-3774.26Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_GIALA1.356e-3673.27Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_STYLE5.152e-3679.57Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_PLAFK8.788e-3671.29Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_HYPBU1.832e-3363.37Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_CRYPV2.393e-3370.30Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_IGNH46.963e-3363.37Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_DESMO9.094e-3361.39Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189613 ID=CN189613; Name=CN189613; organism=Citrus sinensis; type=EST; length=306bp
CAAGGCTGATCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGT
TCGAGACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGT
GACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGT
CCTTATCATTGACTCTACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGG
ATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAG
CAGATGATTTGCTGCTGTAACAAGATGGATGCCACCACCCCCAAGTACTC
AAAGGC
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