CN189612

Overview
NameCN189612
Unique NameCN189612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189612 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.798e-13
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = -3
Query:  311 EALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 745
            E +  ++ GD V   V+     D++ G+V +++K+ P      F +Q+ I+  P  +  GY+ V+  HT+   V F++L+ K+D+ + K  +K P F   G   + ++    P+ +E F DY  +GRF +RD   TVAVG +  +
Sbjct:  519 EEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660          
BLAST of CN189612 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 39/155 (25.16%), Postives = 78/155 (50.32%), Query Frame = -3
Query:  305 VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 769
            VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  531 VKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEIKE 684          
BLAST of CN189612 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 39/155 (25.16%), Postives = 78/155 (50.32%), Query Frame = -3
Query:  305 VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 769
            VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  531 VKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEMKE 684          
BLAST of CN189612 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 38/154 (24.68%), Postives = 77/154 (50.00%), Query Frame = -3
Query:  305 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 766
            K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  527 KGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILIFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 679          
BLAST of CN189612 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 37/154 (24.03%), Postives = 77/154 (50.00%), Query Frame = -3
Query:  305 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 766
            K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F +++++ N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  530 KGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 682          
BLAST of CN189612 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 37/153 (24.18%), Postives = 76/153 (49.67%), Query Frame = -3
Query:  308 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 766
            K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  ++
Sbjct:  534 KGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCVPKE-PIKVCTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYSGSTIAAGVVTEIK 685          
The following BLAST results are available for this feature:
BLAST of CN189612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
ERF3_SCHPO2.798e-1330.34Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1L_HUMAN1.389e-1225.16HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
HBS1L_PONAB2.369e-1225.16HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_RAT3.094e-1224.68HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE4.041e-1224.03HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_BOVIN1.176e-1124.18HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189612 ID=CN189612; Name=CN189612; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTTTAAAAATATATGAGCACCGACTAAATTTTCAAAA
TCGAGCACTAACGGCTAATCTTGAAACAAAATGTTTGACATCCAAAAACT
GGTTTATCAACTTACCAAAAAAAACTCAATGATATAAAACCAAATTCAGA
GAATTAAAATGAAGTCTACCGTAAAACAAACTAAAACATGACAAAAATAG
CATAAACAGAGAAAATAAAAGCTAACTATAGCAGATAGATCCCAAAAAAC
TCCTCACTTCTTCTTGGCAGCAGACTTGGTGACCTTGGCACCCGATGGAT
CCTTCTTTTCAACACTCTTGATCACACCAACAGCTACAGTCTGACGCATG
TCCCTAACAGCAAAACGACCAAGGGGTGGGTAGTCGGAGAAGGTCTCAAC
AACCATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCATCTCCATTCT
TCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCAGATCGCCTGTCAATC
TTGGTCACAAGCTCAGAAAACTTGACAGCAATGTGGGAGGTGTGGCAGTC
AAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGATGGTTCATGATGA
TGACCTGTGAAGTGAAGTTGGCAGCTTCCCTGGCCGGGTCATCCTTCGAG
TTGGAAGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCAC
GTTGAAGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTGGT
GCATCTCAACAGACTTAACCT
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