CN189611

Overview
NameCN189611
Unique NameCN189611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189611_ssr128 microsatellite CN189611_ssr128:128..143. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189611 vs. ExPASy Swiss-Prot
Match: S26A2_BUBBU (Sulfate transporter OS=Bubalus bubalis GN=SLC26A2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 30/87 (34.48%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:  355 PIFEWAPRYSFQF-LKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEV 612
            P+ +W P+Y  +  +  D+++G+ +  L +PQ I+Y+ LA   PI GLY+SF   L+Y I+G+S+ ++VG   +  L+I   + +E+
Sbjct:   95 PVLQWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPIYGLYTSFFASLIYFILGTSRHISVGIFGILCLMIGEVVDREL 181
[Close]
BLAST of CN189611 vs. ExPASy Swiss-Prot
Match: S26A2_BOVIN (Sulfate transporter OS=Bos taurus GN=SLC26A2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 30/87 (34.48%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:  355 PIFEWAPRYSFQF-LKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEV 612
            P+ +W P+Y  +  +  D+++G+ +  L +PQ I+Y+ LA   PI GLY+SF   L+Y I+G+S+ ++VG   +  L+I   + +E+
Sbjct:   95 PVLQWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPIYGLYTSFFASLIYFILGTSRHISVGIFGILCLMIGEVVDREL 181
[Close]
BLAST of CN189611 vs. ExPASy Swiss-Prot
Match: S26A2_MOUSE (Sulfate transporter OS=Mus musculus GN=Slc26a2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 29/89 (32.58%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:  352 FPIFEWAPRYSFQF-LKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVN 615
            FP+  W P+Y  +  +  D+++G+ +  L +PQ I+Y+ LA   PI GLY+SF   ++Y + G+S+ ++VG   +  L+I   + +E++
Sbjct:   93 FPVLRWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPIYGLYTSFFASIIYFLFGTSRHISVGIFGILCLMIGEVVDRELH 181
The following BLAST results are available for this feature:
BLAST of CN189611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
S26A2_BUBBU2.167e-1134.48Sulfate transporter OS=Bubalus bubalis GN=SLC26A2 ... [more]
S26A2_BOVIN2.167e-1134.48Sulfate transporter OS=Bos taurus GN=SLC26A2 PE=3 ... [more]
S26A2_MOUSE2.830e-1132.58Sulfate transporter OS=Mus musculus GN=Slc26a2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189611 ID=CN189611; Name=CN189611; organism=Citrus sinensis; type=EST; length=692bp
GAGGCTCCGAATTCAGCGTAGCCACTCCTATAACACTGCGCATATCTTTT
GCATTTAGCTCAACCCAAATACGTTCTCCGATATAAAACGCAGCCGCTGC
ATTTTATTCTCTCTATCTTGCATTTAGTTAATTAATTAATTAACTACATG
GATAAGGGTAACGCAGACTACGTGTATCCATCGTCTAAAGAAAATGTGGA
GAATGCACATCGTGTTGCGATTCCCCCACCGCAGCCATTTTTCAATTCAC
TGAAGTATAATCTTAAAGAGACGTTCTTCCCTGATGATCCGCTCAGGCTA
TTCAAGAACAAGCCGGCATCTAAGAAGTTCATATTAGGCCTTCAGTATGT
GTTTCCCATTTTTGAATGGGCTCCGCGTTACAGCTTTCAGTTCTTGAAAG
CTGACCTTATTGCTGGGATCACCATTGCAAGTCTCGCAATTCCTCAGGGG
ATTAGTTATGCGAAGCTGGCGAACTTGCCCCCAATTCTTGGCCTATATTC
AAGCTTTGTTCCGCCATTGGTTTATGCTATCATGGGGAGCTCCAAAGATT
TGGCAGTTGGAACGGTGGCTGTCGCCTCACTTCTCATAGCTTCATTCTTG
GGGCAAGAAGTTAATTATAATGAGAACCCTAAGCTATATCTTCATCTTGC
TTTCACTGCAACATTTTTTTGCTGGTGTTTTTCAAGCTTCCT
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