CN189604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BURCM (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hmgA PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.622e-66 Identity = 93/165 (56.36%), Postives = 120/165 (72.73%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+P +LVSEF S T P QLRW P+ +P PTDF++GL T+ G GS+ +G AIH+Y AN+SM + F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RF+V+LPDG +RGYI E FG +LPDLGPIG+NGLA PRDFL Sbjct: 73 AVHRPFEPFTGPQ-RLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVEGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFSVALPDGDARGYICENFGALLRLPDLGPIGSNGLANPRDFL 236 HSP 2 Score: 88.9669 bits (219), Expect = 1.622e-66 Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 3 Query: 99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 Y SGF N F++EA+ GALP G+NSP P+GLYAEQ+SGT+FT+PR N+RSWLYRI+P+ Sbjct: 13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPA 72
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BURPS (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei GN=hmgA PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.112e-65 Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+ V ++V+EF S+ T P QLRW P+ +P PTDF+DG T+ G GS+ G AIH+Y AN+SM F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG +LPDLGPIG+NGLA PRDFL Sbjct: 79 AVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFGALLRLPDLGPIGSNGLANPRDFL 242 HSP 2 Score: 88.9669 bits (219), Expect = 5.112e-65 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3 Query: 81 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 DFS + Y+SGF N F++EA+ GALP +NSP P+GLYAEQ SGT+FT+PR N+RSWLYRI+P+ Sbjct: 10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPA 78
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BURP1 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1710b) GN=hmgA PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.112e-65 Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+ V ++V+EF S+ T P QLRW P+ +P PTDF+DG T+ G GS+ G AIH+Y AN+SM F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG +LPDLGPIG+NGLA PRDFL Sbjct: 79 AVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFGALLRLPDLGPIGSNGLANPRDFL 242 HSP 2 Score: 88.9669 bits (219), Expect = 5.112e-65 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3 Query: 81 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 DFS + Y+SGF N F++EA+ GALP +NSP P+GLYAEQ SGT+FT+PR N+RSWLYRI+P+ Sbjct: 10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPA 78
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BURP0 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1106a) GN=hmgA PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.112e-65 Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+ V ++V+EF S+ T P QLRW P+ +P PTDF+DG T+ G GS+ G AIH+Y AN+SM F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG +LPDLGPIG+NGLA PRDFL Sbjct: 79 AVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFGALLRLPDLGPIGSNGLANPRDFL 242 HSP 2 Score: 88.9669 bits (219), Expect = 5.112e-65 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3 Query: 81 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 DFS + Y+SGF N F++EA+ GALP +NSP P+GLYAEQ SGT+FT+PR N+RSWLYRI+P+ Sbjct: 10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPA 78
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BURMS (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain SAVP1) GN=hmgA PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.112e-65 Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+ V ++V+EF S+ T P QLRW P+ +P PTDF+DG T+ G GS+ G AIH+Y AN+SM F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG +LPDLGPIG+NGLA PRDFL Sbjct: 79 AVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFGALLRLPDLGPIGSNGLANPRDFL 242 HSP 2 Score: 88.9669 bits (219), Expect = 5.112e-65 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3 Query: 81 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 DFS + Y+SGF N F++EA+ GALP +NSP P+GLYAEQ SGT+FT+PR N+RSWLYRI+P+ Sbjct: 10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPA 78
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BURMA (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei GN=hmgA PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.112e-65 Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+ V ++V+EF S+ T P QLRW P+ +P PTDF+DG T+ G GS+ G AIH+Y AN+SM F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG +LPDLGPIG+NGLA PRDFL Sbjct: 79 AVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFGALLRLPDLGPIGSNGLANPRDFL 242 HSP 2 Score: 88.9669 bits (219), Expect = 5.112e-65 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3 Query: 81 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 DFS + Y+SGF N F++EA+ GALP +NSP P+GLYAEQ SGT+FT+PR N+RSWLYRI+P+ Sbjct: 10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPA 78
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BURM9 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10229) GN=hmgA PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.112e-65 Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+ V ++V+EF S+ T P QLRW P+ +P PTDF+DG T+ G GS+ G AIH+Y AN+SM F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG +LPDLGPIG+NGLA PRDFL Sbjct: 79 AVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFGALLRLPDLGPIGSNGLANPRDFL 242 HSP 2 Score: 88.9669 bits (219), Expect = 5.112e-65 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3 Query: 81 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 DFS + Y+SGF N F++EA+ GALP +NSP P+GLYAEQ SGT+FT+PR N+RSWLYRI+P+ Sbjct: 10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPA 78
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BURM7 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10247) GN=hmgA PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.112e-65 Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+ V ++V+EF S+ T P QLRW P+ +P PTDF+DG T+ G GS+ G AIH+Y AN+SM F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG +LPDLGPIG+NGLA PRDFL Sbjct: 79 AVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFGALLRLPDLGPIGSNGLANPRDFL 242 HSP 2 Score: 88.9669 bits (219), Expect = 5.112e-65 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3 Query: 81 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 DFS + Y+SGF N F++EA+ GALP +NSP P+GLYAEQ SGT+FT+PR N+RSWLYRI+P+ Sbjct: 10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPA 78
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BURTA (Homogentisate 1,2-dioxygenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hmgA PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 8.692e-65 Identity = 89/165 (53.94%), Postives = 116/165 (70.30%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+ V ++V++F S T P QLRW P+ +P PTDF+DG T+ G GS+ G AIH+Y AN+SM F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG +LPDLGPIG+NGLA PRDFL Sbjct: 79 AVHRPFE-LVSGERRIVADFGDSGDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFGALLRLPDLGPIGSNGLANPRDFL 242 HSP 2 Score: 89.7373 bits (221), Expect = 8.692e-65 Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 3 Query: 81 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 DFS + Y+SGF N F++EA+ GALP +NSP P+GLYAEQ+SGT+FT+PR N+RSWLYRI+P+ Sbjct: 10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPA 78
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RALPJ (Homogentisate 1,2-dioxygenase OS=Ralstonia pickettii (strain 12J) GN=hmgA PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 1.466e-61 Identity = 84/163 (51.53%), Postives = 107/163 (65.64%), Query Frame = 2 Query: 278 STHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 + H PF+ A G+ S F++ +P QLRW P+ P + TDFIDG+ T G G + G IH+Y AN M + F NADG+ L+VPQ+GRL + TE G ++V P EIAV+P+G RF V LPDG +RGYI E FG F+LPDLG IG+NGLA PRDFL Sbjct: 82 AVHLPFEAM--AQGRFHSHFNEVPP--SPNQLRWDPLPAPAAGTDFIDGIVTFAGNGGPDAQTGCGIHLYAANADMTDRFFYNADGELLIVPQQGRLRLLTEMGVVDVEPLEIAVIPRGVRFRVELPDGDARGYICENFGALFRLPDLGVIGSNGLANPRDFL 240 HSP 2 Score: 97.0561 bits (240), Expect = 1.466e-61 Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 3 Query: 99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKP 275 Y+SGFGN FS+EA+ GALP GQNSP P+GLYAEQISGT+FT+PR N+RSWLYRI+P Sbjct: 22 YQSGFGNEFSTEALPGALPHGQNSPQKAPYGLYAEQISGTAFTAPRAHNRRSWLYRIRP 80 The following BLAST results are available for this feature:
BLAST of CN189604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189604 ID=CN189604; Name=CN189604; organism=Citrus sinensis; type=EST; length=769bpback to top |