CN189604

Overview
NameCN189604
Unique NameCN189604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2496 contig Csv1_Contig2496:8..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_XANOM (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=hmgA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.452e-58
Identity = 76/134 (56.72%), Postives = 94/134 (70.15%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            P Q+RW P+ +P +PTDF+DGLYT+ G GS     G A+H+Y AN SM    F NADG+ L+VPQ GRL + TE G LE+ P +I V+P+G RF V L D  +RGY+ E FG   +LPDLGPIGANGLA PRDF
Sbjct:   91 PDQMRWSPLPLPATPTDFVDGLYTMAGNGSPEAMTGVAVHLYAANASMHGRFFYNADGELLLVPQLGRLRVCTELGVLELEPQQIGVIPRGVRFRVELLDSAARGYVCENFGGLLRLPDLGPIGANGLANPRDF 224          

HSP 2 Score: 87.8113 bits (216), Expect = 1.452e-58
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3
Query:   96 NYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSQHMNRLSL 302
            +Y +GFGN F++EA+ G+LP GQNSP     GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+    R SL
Sbjct:    6 HYMTGFGNEFATEAVAGSLPVGQNSPQRVAHGLYAEQLSGTAFTAPRGENRRSWLYRIRPAAVHGRFSL 74          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_XANOR (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae GN=hmgA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.893e-58
Identity = 75/134 (55.97%), Postives = 94/134 (70.15%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            P Q+RW P+ +P +PTDF+DGLYT+ G GS     G A+H+Y AN SM    F NADG+ L+VPQ GRL + TE G LE+ P ++ V+P+G RF V L D  +RGY+ E FG   +LPDLGPIGANGLA PRDF
Sbjct:   91 PDQMRWSPLPLPATPTDFVDGLYTMAGNGSPEAMTGVAVHLYAANASMHGRFFYNADGELLLVPQLGRLRVCTELGVLELEPQQVGVIPRGVRFRVELLDSAARGYVCENFGGLLRLPDLGPIGANGLANPRDF 224          

HSP 2 Score: 87.8113 bits (216), Expect = 1.893e-58
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3
Query:   96 NYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSQHMNRLSL 302
            +Y +GFGN F++EA+ G+LP GQNSP     GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+    R SL
Sbjct:    6 HYMTGFGNEFATEAVAGSLPVGQNSPQRVAHGLYAEQLSGTAFTAPRGENRRSWLYRIRPAAVHGRFSL 74          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_XANC5 (Homogentisate 1,2-dioxygenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=hmgA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.502e-57
Identity = 74/134 (55.22%), Postives = 94/134 (70.15%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            P Q+RW P+ +P + TDF+DGLYT+ G GS     G A+H+Y AN SM +  F NADG+ L+VPQ GRL + TE G LE+ P +I V+P+G RF V L D  +RGY+ E FG   +LP+LGPIGANGLA PRDF
Sbjct:   93 PDQMRWSPLPLPATRTDFVDGLYTMAGNGSPEAMTGVAVHLYAANASMRDRFFYNADGELLLVPQLGRLRVCTELGVLELEPQQIGVIPRGLRFRVELLDSEARGYVCENFGGLLRLPELGPIGANGLANPRDF 226          

HSP 2 Score: 87.8113 bits (216), Expect = 3.502e-57
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3
Query:   96 NYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSQHMNRLSL 302
            +Y +GFGN F++EA+ G+LP GQNSP     GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+    R SL
Sbjct:    8 SYMTGFGNEFATEAVAGSLPVGQNSPQRVAHGLYAEQLSGTAFTAPRGENRRSWLYRIRPAAVHGRFSL 76          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_XANAC (Homogentisate 1,2-dioxygenase OS=Xanthomonas axonopodis pv. citri GN=hmgA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.950e-57
Identity = 73/134 (54.48%), Postives = 92/134 (68.66%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            P QLRW P+ +P  PTDF+DGLYT+ G G      G  +H+Y AN SM +  F +ADG+ L+VPQ+GRL + TE G L + P +I V+P+G RF V L D  +RGY+ E FG   +LPDLGPIGANGLA PRDF
Sbjct:  112 PDQLRWSPLPLPSVPTDFVDGLYTMAGNGGPEAMSGVGVHVYAANASMQDRFFYDADGELLLVPQQGRLRVHTELGVLALEPQQIGVIPRGMRFRVELLDAAARGYVCENFGGLLRLPDLGPIGANGLANPRDF 245          

HSP 2 Score: 87.8113 bits (216), Expect = 5.950e-57
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 3
Query:   72 DGEDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSQHMNRLSL 302
            D    +D  Y +GFGN F++EA+ G+LP GQNSP     GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+      SL
Sbjct:   19 DAPMHNDQRYMTGFGNEFATEAVAGSLPIGQNSPQRVAHGLYAEQLSGTAFTAPRGQNRRSWLYRIRPAAVHGSFSL 95          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEPW (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain W619) GN=hmgA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.720e-56
Identity = 75/136 (55.15%), Postives = 97/136 (71.32%), Query Frame = 2
Query:  359 TPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            TP +LRW P  +P  PTDFI+G   +    ++    G ++++Y AN+SM+   F NADG+ L+VP++GRL IATE G LEV P EIAV+P+G +F V LPDG +RGYIAE  G   +LPDLGPIG+NGLA PRDFL
Sbjct:   92 TPNRLRWNPQPLPTEPTDFIEGWLPMVANSAADKPAGVSVYIYCANRSMER-VFFNADGELLIVPEQGRLRIATELGLLEVEPQEIAVVPRGMKFRVELPDGQARGYIAENHGAPLRLPDLGPIGSNGLANPRDFL 226          

HSP 2 Score: 87.8113 bits (216), Expect = 1.720e-56
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 3
Query:   90 DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            DL Y SGFGN F+SEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI+PS
Sbjct:    8 DLQYLSGFGNEFASEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSELRRTWLYRIRPS 70          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEAE (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa GN=hmgA PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.443e-56
Identity = 74/136 (54.41%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  359 TPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            TP +LRW P+ +P+ PTDF+DGL  +          G +I+ Y AN+SM+ C F +ADG+ L+VPQ GRL + TE G L+V P EIAV+P+G +F V L DG +RGYIAE  G   +LPDLGPIG+NGLA PRDFL
Sbjct:   91 TPNRLRWDPLALPEQPTDFLDGLLRMAANAPGDKPAGVSIYQYLANRSMERC-FYDADGELLLVPQLGRLRLCTELGALQVEPLEIAVIPRGMKFRVELLDGEARGYIAENHGAPLRLPDLGPIGSNGLANPRDFL 225          

HSP 2 Score: 88.1965 bits (217), Expect = 8.443e-56
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   81 DFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            D + L Y+SGFGN FSSEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI PS
Sbjct:    4 DSTALAYQSGFGNEFSSEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSEARRTWLYRITPS 69          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEAB (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hmgA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.443e-56
Identity = 74/136 (54.41%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  359 TPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            TP +LRW P+ +P+ PTDF+DGL  +          G +I+ Y AN+SM+ C F +ADG+ L+VPQ GRL + TE G L+V P EIAV+P+G +F V L DG +RGYIAE  G   +LPDLGPIG+NGLA PRDFL
Sbjct:   91 TPNRLRWDPLALPEQPTDFLDGLLRMAANAPGDKPAGVSIYQYLANRSMERC-FYDADGELLLVPQLGRLRLCTELGALQVEPLEIAVIPRGMKFRVELLDGEARGYIAENHGAPLRLPDLGPIGSNGLANPRDFL 225          

HSP 2 Score: 88.1965 bits (217), Expect = 8.443e-56
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   81 DFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            D + L Y+SGFGN FSSEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI PS
Sbjct:    4 DSTALAYQSGFGNEFSSEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSEARRTWLYRITPS 69          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEA8 (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain LESB58) GN=hmgA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.443e-56
Identity = 74/136 (54.41%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  359 TPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            TP +LRW P+ +P+ PTDF+DGL  +          G +I+ Y AN+SM+ C F +ADG+ L+VPQ GRL + TE G L+V P EIAV+P+G +F V L DG +RGYIAE  G   +LPDLGPIG+NGLA PRDFL
Sbjct:   91 TPNRLRWDPLALPEQPTDFLDGLLRMAANAPGDKPAGVSIYQYLANRSMERC-FYDADGELLLVPQLGRLRLCTELGALQVEPLEIAVIPRGMKFRVELLDGEARGYIAENHGAPLRLPDLGPIGSNGLANPRDFL 225          

HSP 2 Score: 88.1965 bits (217), Expect = 8.443e-56
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   81 DFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            D + L Y+SGFGN FSSEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI PS
Sbjct:    4 DSTALAYQSGFGNEFSSEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSEARRTWLYRITPS 69          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEA7 (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain PA7) GN=hmgA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.443e-56
Identity = 74/136 (54.41%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  359 TPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            TP +LRW P+ +P+ PTDF+DGL  +          G +I+ Y AN+SM+ C F +ADG+ L+VPQ GRL + TE G L+V P EIAV+P+G +F V L DG +RGYIAE  G   +LPDLGPIG+NGLA PRDFL
Sbjct:   91 TPNRLRWDPLALPEQPTDFLDGLLRMAANAPGDKPAGVSIYQYLANRSMERC-FYDADGELLLVPQLGRLRLCTELGALQVEPLEIAVIPRGMKFRVELLDGEARGYIAENHGAPLRLPDLGPIGSNGLANPRDFL 225          

HSP 2 Score: 88.1965 bits (217), Expect = 8.443e-56
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   81 DFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            D + L Y+SGFGN FSSEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI PS
Sbjct:    4 DSTALAYQSGFGNEFSSEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSEARRTWLYRITPS 69          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEPF (Homogentisate 1,2-dioxygenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.444e-56
Identity = 77/136 (56.62%), Postives = 97/136 (71.32%), Query Frame = 2
Query:  359 TPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            TP +LRW P+D+P  PTDFIDGL ++     +    G +I+ Y AN+SM+   F NADG+ L+VPQ GRL IATE G L+V+P EIAVLP+G +F V L D  +RGY+AE  G   +LPDLGPIG+NGLA PRDFL
Sbjct:   90 TPNRLRWNPLDLPTEPTDFIDGLVSMAANSGADKPAGISIYHYGANRSMER-VFFNADGELLLVPQLGRLRIATELGVLDVAPLEIAVLPRGLKFRVELLDPQARGYVAENHGAPLRLPDLGPIGSNGLANPRDFL 224          

HSP 2 Score: 86.6557 bits (213), Expect = 8.444e-56
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   87 SDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLSLECLLMG 320
            S L Y+SGFGN FSSEA+ GALP GQNSP   P+GLY E  SGT+FT  R   +R+W+YRI+PS  H   + LE  L G
Sbjct:    5 SALAYQSGFGNEFSSEALPGALPVGQNSPQKAPYGLYTELFSGTAFTMTRSEARRTWMYRIQPSANHPAFVKLERQLAG 83          
The following BLAST results are available for this feature:
BLAST of CN189604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_XANOM1.452e-5856.72Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_XANOR1.893e-5855.97Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_XANC53.502e-5755.22Homogentisate 1,2-dioxygenase OS=Xanthomonas campe... [more]
HGD_XANAC5.950e-5754.48Homogentisate 1,2-dioxygenase OS=Xanthomonas axono... [more]
HGD_PSEPW1.720e-5655.15Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEAE8.443e-5654.41Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEAB8.443e-5654.41Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEA88.443e-5654.41Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEA78.443e-5654.41Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEPF8.444e-5656.62Homogentisate 1,2-dioxygenase OS=Pseudomonas fluor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189604 ID=CN189604; Name=CN189604; organism=Citrus sinensis; type=EST; length=769bp
GAGGGTGAGCTGCTGAGACACAAATGGAGAAGAAGAGTCAACATCAATCA
TCATCATTAATCAGAAAAACGGACGGCGAAGATTTCTCTGATCTGAATTA
CGAATCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGACGGTGCGT
TGCCACGTGGACAGAACAGCCCCCTCGTTTGTCCGTTCGGTCTCTACGCC
GAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCAATCAACG
CAGTTGGTTATACAGAATAAAACCTTCTCAACACATGAACCGTTTAAGCC
TCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAAGTCTAACA
GTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATATCCCTGAT
TCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGGGCTGGCAG
CTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTGCCAACAAAT
CAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTTTGGTAGTT
CCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAACTGGAAGT
CTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTTTGCTGTAA
GTTTACCAGATGGTCCATCACGTGGTTACATCGCAGAGATTTTTGGTACC
CATTTTCAGCTTCCTGATCTTGGTCCAATAGGTGCAAATGGTCTTGCTGC
TCCGAGAGATTTCCTTGTT
back to top