CN189604

Overview
NameCN189604
Unique NameCN189604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2496 contig Csv1_Contig2496:8..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_STRCO (Homogentisate 1,2-dioxygenase OS=Streptomyces coelicolor GN=hmgA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.870e-55
Identity = 69/134 (51.49%), Postives = 92/134 (68.66%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            P +LRW P+ +P   TDF++GL+T+ G G +  R G A+H+Y A  SMD   F +ADG+ L+VP++G L + TE G L   PG +A++P+G RF V L D  +RGY+ E +G  FQLPDLGPIGANGLA  RDF
Sbjct:   99 PNRLRWNPLPVPGPATDFVEGLWTLGGNGDATQRTGMAVHLYHATASMDR-VFSDADGELLIVPERGGLLLRTEFGLLHAEPGHVALIPRGVRFRVQLLDEDARGYVCENYGAPFQLPDLGPIGANGLANARDF 231          

HSP 2 Score: 90.5077 bits (223), Expect = 1.870e-55
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   93 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            L Y SGFGN  +SEA+ GALP G+NSP   P GLYAEQ+SGT+FT PR  N+RSWLYRI+PS
Sbjct:   12 LAYLSGFGNEHASEAVAGALPEGRNSPQRAPLGLYAEQLSGTAFTEPRAHNRRSWLYRIRPS 73          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_STRAW (Homogentisate 1,2-dioxygenase OS=Streptomyces avermitilis GN=hmgA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.043e-55
Identity = 71/134 (52.99%), Postives = 94/134 (70.15%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            P +LRW P+  P + TDF+ GL+T+ G G +  R G A+H+Y AN SMD   F +ADG+ L+VP++G L + TE G L   PG++A++P+G RF V L D  +RGY+ E +G  FQLPDLGPIGANGLAA RDF
Sbjct:   99 PNRLRWNPLPEPPAGTDFVGGLWTLGGNGDATQRTGMAVHLYHANSSMDR-VFSDADGELLIVPERGGLLLRTEFGLLHAEPGQVALVPRGVRFRVDLLDESARGYVCENYGAPFQLPDLGPIGANGLAAARDF 231          

HSP 2 Score: 86.2705 bits (212), Expect = 7.043e-55
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   93 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            L + +GFGN  +SEA+ GALP G+NSP   P GLYAEQ+SG++FT PR  N+RSWLYRI+PS
Sbjct:   12 LAHLTGFGNEHASEAVPGALPEGRNSPQRAPLGLYAEQLSGSAFTEPRAHNRRSWLYRIRPS 73          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEP1 (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=hmgA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.197e-54
Identity = 74/135 (54.81%), Postives = 95/135 (70.37%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            P +LRW P  IP  PTDFI+G   +    ++    G +I++Y AN+SM+   F NADG+ L+VP++GRL IATE G +EV P EIAV+P+G +F V L DG +RGYIAE  G   +LPDLGPIG+NGLA PRDFL
Sbjct:   93 PNRLRWSPQPIPAEPTDFIEGWLPMAANAAAEKPAGVSIYIYCANRSMER-VFFNADGELLLVPEQGRLRIATELGVMEVEPLEIAVIPRGMKFRVELLDGQARGYIAENHGAPLRLPDLGPIGSNGLANPRDFL 226          

HSP 2 Score: 88.1965 bits (217), Expect = 1.197e-54
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   90 DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            DL+Y SGFGN F+SEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI+PS
Sbjct:    8 DLHYLSGFGNEFASEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSELRRTWLYRIRPS 70          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEPK (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain KT2440) GN=hmgA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.561e-54
Identity = 74/135 (54.81%), Postives = 94/135 (69.63%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            P +LRW P  IP  PTDFI+G   +     +    G +I++Y AN+SM+   F NADG+ L+VP++GRL IATE G +EV P EIAV+P+G +F V L DG +RGYIAE  G   +LPDLGPIG+NGLA PRDFL
Sbjct:   93 PNRLRWSPQPIPAEPTDFIEGWLPMAANAGAEKPAGVSIYIYRANRSMER-VFFNADGELLLVPEQGRLRIATELGVMEVEPLEIAVIPRGMKFRVELLDGQARGYIAENHGAPLRLPDLGPIGSNGLANPRDFL 226          

HSP 2 Score: 88.1965 bits (217), Expect = 1.561e-54
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   90 DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            DL+Y SGFGN F+SEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI+PS
Sbjct:    8 DLHYLSGFGNEFASEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSELRRTWLYRIRPS 70          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEPG (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain GB-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.652e-54
Identity = 73/135 (54.07%), Postives = 95/135 (70.37%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            P +LRW P  IP  PTDFI+G   +    ++    G +I++Y AN+SM+   F NADG+ L+VP++GRL IATE G +EV P EIAV+P+G +F V L DG +RGYIAE  G   ++PDLGPIG+NGLA PRDFL
Sbjct:   93 PNRLRWSPQPIPAEPTDFIEGWLPMVANAAAEKPAGVSIYIYRANRSMER-VFFNADGELLLVPEQGRLRIATELGVMEVEPLEIAVIPRGMKFRVELLDGQARGYIAENHGAPLRIPDLGPIGSNGLANPRDFL 226          

HSP 2 Score: 88.1965 bits (217), Expect = 2.652e-54
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   90 DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            DL+Y SGFGN F+SEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI+PS
Sbjct:    8 DLHYLSGFGNEFASEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSELRRTWLYRIRPS 70          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSESM (Homogentisate 1,2-dioxygenase OS=Pseudomonas syringae pv. tomato GN=hmgA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.652e-54
Identity = 71/135 (52.59%), Postives = 94/135 (69.63%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            P +LRW   DIP  P DFIDGL  +    ++    G ++++Y AN SM   AF +ADG++L+VPQ+GRL I TE G L++ P EIAVLP+G +F+V L DG +RGY+ E  G   +LP+LGPIG+NGLA PRDFL
Sbjct:   94 PNRLRWNAFDIPAEPVDFIDGLIALASTSAADQAEGVSVYVYAANTSMQR-AFFSADGEWLIVPQQGRLRIITEMGVLDIGPLEIAVLPRGLKFSVQLLDGSARGYLCENHGGVLRLPELGPIGSNGLANPRDFL 227          

HSP 2 Score: 88.5817 bits (218), Expect = 2.652e-54
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   84 FSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            F  L Y+SGF N FSSEA+ GALP GQNSP   P GLYAEQ SGT+FT  R   +R+WLYRIKPS
Sbjct:    7 FEALAYQSGFANQFSSEALPGALPMGQNSPQKHPLGLYAEQFSGTAFTVARNEARRTWLYRIKPS 71          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEF5 (Homogentisate 1,2-dioxygenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=hmgA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.457e-54
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 2
Query:  359 TPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            TP +LRW P+ IP  PTDFIDGL  +    ++    G +++ Y AN+SM+   F NADG+ L+VP+ GRL I TE G L++ P EIAVLP+G +F + L D  +RGY+AE  G   +LPDLGPIG+NGLA PRDFL
Sbjct:   93 TPNRLRWSPLQIPSEPTDFIDGLVAMVANSAAQKPAGISVYHYRANRSMER-VFFNADGELLLVPELGRLRIVTELGMLDLEPLEIAVLPRGLKFRIELLDPQARGYVAENHGAPLRLPDLGPIGSNGLANPRDFL 227          

HSP 2 Score: 87.0409 bits (214), Expect = 3.457e-54
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 3
Query:   87 SDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            S L+Y+SGFGN F+SEA+ GALP GQNSP   P+GLYAE  SGT+FT  R   +R+W+YRI+PS
Sbjct:    8 SALSYQSGFGNEFASEALPGALPVGQNSPQKAPYGLYAELFSGTAFTMTRSEARRTWMYRIQPS 71          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSE14 (Homogentisate 1,2-dioxygenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=hmgA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.301e-53
Identity = 71/135 (52.59%), Postives = 92/135 (68.15%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            P +LRW   DIP  P DFIDGL  +    ++    G ++++Y AN SM   AF +ADG++L+VPQ+GRL I TE G L++ P EIAVLP+G +F V L D  +RGYI E  G   +LP+LGPIG+NGLA PRDFL
Sbjct:   94 PNRLRWNAFDIPAEPVDFIDGLIPLASTSAADQADGVSVYVYAANTSMQR-AFFSADGEWLIVPQQGRLRIITELGLLDIEPLEIAVLPRGMKFRVQLLDSSARGYICENHGCALRLPELGPIGSNGLANPRDFL 227          

HSP 2 Score: 88.5817 bits (218), Expect = 1.301e-53
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   93 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            L Y+SGFGN FSSEA+ GALP GQNSP   P GLYAEQ SGT+FT  R   +R+WLYRIKPS
Sbjct:   10 LAYQSGFGNQFSSEALPGALPIGQNSPQKHPLGLYAEQFSGTAFTVARSEARRTWLYRIKPS 71          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEE4 (Homogentisate 1,2-dioxygenase OS=Pseudomonas entomophila (strain L48) GN=hmgA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.697e-53
Identity = 74/136 (54.41%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  359 TPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            TP +LRW P  +P  PTDFI+G   +    +S    G +I++Y AN+SM+   F NADG+ L+VP++GRL IATE G LEV P EIAV+P+G +F V L D  +RGYIAE  G   ++PDLGPIG+NGLA PRDFL
Sbjct:   92 TPNRLRWSPQPMPAEPTDFIEGWLPMVANSASEKPAGVSIYIYRANRSMER-VFFNADGELLLVPEQGRLRIATELGVLEVEPLEIAVIPRGMKFRVELLDDQARGYIAENHGAPLRIPDLGPIGSNGLANPRDFL 226          

HSP 2 Score: 85.5001 bits (210), Expect = 1.697e-53
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   93 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            L Y SGFGN F+SEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI+PS
Sbjct:    9 LQYLSGFGNEFASEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMTRSELRRTWLYRIRPS 70          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_PSEU2 (Homogentisate 1,2-dioxygenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=hmgA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.697e-53
Identity = 72/135 (53.33%), Postives = 94/135 (69.63%), Query Frame = 2
Query:  362 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            P +LRW   DIP +PTDFIDGL  +    ++    G ++++YTAN SM   AF +ADG++LVVPQ+GRL I TE G L++ P EIAVLP+G +F V L D  +RGY+ E  G   +LP+LGPIG+NGLA  RDFL
Sbjct:   94 PNRLRWNAFDIPAAPTDFIDGLIPLASTSAAEQAEGVSVYLYTANTSMQR-AFFSADGEWLVVPQQGRLRIVTELGLLDIEPLEIAVLPRGLKFCVQLLDSSARGYLCENHGCALRLPELGPIGSNGLANSRDFL 227          

HSP 2 Score: 85.8853 bits (211), Expect = 1.697e-53
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   93 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSQHMNR 293
            L Y+SGFGN FSSEA+  ALP GQNSP   P GLYAEQ SGT+FT  R   +R+WLYRIKPS   +R
Sbjct:   10 LVYQSGFGNQFSSEALPDALPVGQNSPQKHPLGLYAEQFSGTAFTVARSEARRTWLYRIKPSAAHSR 76          
The following BLAST results are available for this feature:
BLAST of CN189604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_STRCO1.870e-5551.49Homogentisate 1,2-dioxygenase OS=Streptomyces coel... [more]
HGD_STRAW7.043e-5552.99Homogentisate 1,2-dioxygenase OS=Streptomyces aver... [more]
HGD_PSEP11.197e-5454.81Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEPK1.561e-5454.81Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEPG2.652e-5454.07Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSESM2.652e-5452.59Homogentisate 1,2-dioxygenase OS=Pseudomonas syrin... [more]
HGD_PSEF53.457e-5452.94Homogentisate 1,2-dioxygenase OS=Pseudomonas fluor... [more]
HGD_PSE141.301e-5352.59Homogentisate 1,2-dioxygenase OS=Pseudomonas syrin... [more]
HGD_PSEE41.697e-5354.41Homogentisate 1,2-dioxygenase OS=Pseudomonas entom... [more]
HGD_PSEU21.697e-5353.33Homogentisate 1,2-dioxygenase OS=Pseudomonas syrin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189604 ID=CN189604; Name=CN189604; organism=Citrus sinensis; type=EST; length=769bp
GAGGGTGAGCTGCTGAGACACAAATGGAGAAGAAGAGTCAACATCAATCA
TCATCATTAATCAGAAAAACGGACGGCGAAGATTTCTCTGATCTGAATTA
CGAATCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGACGGTGCGT
TGCCACGTGGACAGAACAGCCCCCTCGTTTGTCCGTTCGGTCTCTACGCC
GAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCAATCAACG
CAGTTGGTTATACAGAATAAAACCTTCTCAACACATGAACCGTTTAAGCC
TCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAAGTCTAACA
GTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATATCCCTGAT
TCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGGGCTGGCAG
CTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTGCCAACAAAT
CAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTTTGGTAGTT
CCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAACTGGAAGT
CTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTTTGCTGTAA
GTTTACCAGATGGTCCATCACGTGGTTACATCGCAGAGATTTTTGGTACC
CATTTTCAGCTTCCTGATCTTGGTCCAATAGGTGCAAATGGTCTTGCTGC
TCCGAGAGATTTCCTTGTT
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