CN189604

Overview
NameCN189604
Unique NameCN189604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2496 contig Csv1_Contig2496:8..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_EMENI (Homogentisate 1,2-dioxygenase OS=Emericella nidulans GN=hmgA PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.084e-52
Identity = 78/160 (48.75%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  311 AHGKLVSEFDKSNSYTT---------PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            AH   V E D S+ +T          P QLRW P D+ D   D++ GL+ + G+G   ++ G  I +Y A K M   AF +ADGDFL+V Q G L I TE G+L V P EI V+P+G R+ V+LPDGP RGYI E++  H+QLP+LGPIG+NGLA  RDF
Sbjct:   75 AHENFVEE-DASSYHTLSDAKKLQHIPNQLRWDPFDL-DETVDWVHGLHLVAGSGDPTVKQGLGILLYAAGKDMGKEAFYSADGDFLIVAQHGVLDIQTELGRLLVRPNEICVIPRGVRYRVTLPDGPVRGYICELYQGHYQLPELGPIGSNGLANARDF 232          

HSP 2 Score: 78.9518 bits (193), Expect = 4.084e-52
Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            Y++GF +   SEAI+GALP G NSP   P+GLYAE++SGT+FT+PR  N+++W+YRI P+
Sbjct:   14 YQNGFDSYHESEAIEGALPVGHNSPQKAPYGLYAEKLSGTAFTAPRHENKQTWVYRILPA 73          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHOPB (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisB18) GN=hmgA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 9.045e-52
Identity = 67/133 (50.38%), Postives = 86/133 (64.66%), Query Frame = 2
Query:  368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            QLRW P  +P     F+ G+ T+  AG    + G A HMY  + SM N  F NADG+ + VPQ+G L + TE G + V+PGEIAV+P+G +F V L DGP+RGY+ E +G  F LP+ GPIGAN LA  RDFL
Sbjct:  109 QLRWDPPPLPQRAQTFLQGVETMTTAGDVNTQAGMAAHMYLISASMVNQHFYNADGELMFVPQQGGLRLVTEFGVIGVAPGEIAVIPRGVKFRVELIDGPARGYLCENYGGGFTLPERGPIGANCLANARDFL 241          

HSP 2 Score: 93.2041 bits (230), Expect = 9.045e-52
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNR 293
            Y SGFGNSF +EA+ GALP G+NSP   P+GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS QH  R
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRAPYGLYAEQLSGSPFTAPRGSNERSWLYRIRPSVQHSGR 86          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHILO (Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN=hmgA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.003e-51
Identity = 71/132 (53.79%), Postives = 84/132 (63.64%), Query Frame = 2
Query:  368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            Q RW PV +P  PTDFI G+ +I  AG    + G A H+Y AN+SM +  F NADG+ LVVPQ G L   TE G +E+ PGEIAVLP+G  F   L D   RGY+ E +G    LPD GPIGAN LA PRDF
Sbjct:  114 QYRWNPVPMPKEPTDFIQGMRSITTAGDVLGQTGMAAHVYVANRSMVDDHFFNADGELLVVPQVGALRFVTEMGVIELRPGEIAVLPRGLVFKAELVDKDVRGYVCENYGAKLTLPDRGPIGANCLANPRDF 245          

HSP 2 Score: 85.5001 bits (210), Expect = 2.003e-51
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   78 EDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNR 293
            ED    +Y  GFGN F +E + G+LP+G+NSP    +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS +H  R
Sbjct:   18 EDRMAFSYMPGFGNDFETETLPGSLPQGRNSPQRPAYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVKHTGR 90          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_NITHX (Homogentisate 1,2-dioxygenase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hmgA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.611e-51
Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 2
Query:  368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            QLRW P  IP+    F+  + T+  AG +  + G A H+Y   +SM +  F NADG+ L VPQ G L   TE G ++  PGEIAV+P+G +F V +P GP+RGY+ E +G  F LP+ GPIGAN LA  RDFL
Sbjct:  109 QLRWDPTPIPEDELTFVQSVRTMTTAGDAHTQTGMAAHIYLITRSMVDQHFYNADGEMLFVPQGGSLRFVTEFGVIDTEPGEIAVIPRGVKFRVEIPSGPARGYLCENYGGAFTLPERGPIGANCLANSRDFL 241          

HSP 2 Score: 92.0485 bits (227), Expect = 2.611e-51
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGSPFTAPRGANERSWLYRIRPS 80          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_BRAJA (Homogentisate 1,2-dioxygenase OS=Bradyrhizobium japonicum GN=hmgA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.783e-51
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 2
Query:  347 NSYTTP-TQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            + Y  P  Q+RW P  +P     F+ G+ T+  AG    + G A H+Y   KSM +  F NADG+ + V Q+G L + TE G+++  PGEI V+P+G +F V +P+GP+RGY+ E +G  F LP+ GPIGAN LA  RDFL
Sbjct:  101 HEYDLPIAQMRWDPTPVPKEEVTFVQGVQTMTTAGDVNTQAGMAAHVYLITKSMVDQHFYNADGELMFVLQQGNLRLVTEFGRIDAEPGEIVVIPRGVKFRVEIPNGPARGYLCENYGGAFTLPERGPIGANCLANARDFL 241          

HSP 2 Score: 92.4337 bits (228), Expect = 5.783e-51
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNR 293
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS +H  R
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVKHSGR 86          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHOPT (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain TIE-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.176e-50
Identity = 63/133 (47.37%), Postives = 84/133 (63.16%), Query Frame = 2
Query:  368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            QLRW P  +P     F+ G+ T+  AG    + G A H+Y   +SM +  F NADG+ + VPQ+G L + TE G + + P EIAV+P+G +F V L DGP+RGY+ E +G  F LP+ GPIGAN LA  RDFL
Sbjct:  109 QLRWDPPPMPQEKLTFLQGVRTMTTAGDVNTQAGMATHLYLITQSMVDQHFYNADGEMMFVPQQGSLRLVTEFGIITIEPAEIAVIPRGIKFRVELVDGPARGYLCENYGGAFTLPERGPIGANCLANSRDFL 241          

HSP 2 Score: 93.2041 bits (230), Expect = 2.176e-50
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLSLECLLMGSW 326
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS +H  R +     MG W
Sbjct:   21 YMSGFGNSFETEALPGALPVGRNSPQRCAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVKHSGRFAKTD--MGLW 95          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHOPA (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris GN=hmgA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.837e-50
Identity = 63/133 (47.37%), Postives = 84/133 (63.16%), Query Frame = 2
Query:  368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            QLRW P  +P     F+ G+ T+  AG    + G A H+Y   +SM +  F NADG+ + VPQ+G L + TE G + + P EIAV+P+G +F V L DGP+RGY+ E +G  F LP+ GPIGAN LA  RDFL
Sbjct:  109 QLRWDPPPMPQEALTFLQGVRTMTTAGDVNTQAGMATHLYLITQSMVDQHFYNADGEMMFVPQQGSLRLVTEFGIITIEPAEIAVIPRGVKFRVELVDGPARGYLCENYGGAFTLPERGPIGANCLANSRDFL 241          

HSP 2 Score: 93.2041 bits (230), Expect = 2.837e-50
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLSLECLLMGSW 326
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS +H  R +     MG W
Sbjct:   21 YMSGFGNSFETEALPGALPVGRNSPQRCAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVKHSGRFAKTD--MGLW 95          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHOP5 (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisA53) GN=hmgA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.187e-50
Identity = 63/133 (47.37%), Postives = 84/133 (63.16%), Query Frame = 2
Query:  368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            QLRW P  +P     F+ G+ T+  AG +  + G A H+Y    SM + AF NADG+ + VPQ+G L   TE G+++  PGEI V+P+G +F V L  GP+RGY+ E +G  F LP+ GPIGAN LA  RDFL
Sbjct:  109 QLRWDPPPLPQHEQTFLQGVVTMTTAGDANTQAGMAAHIYLITASMVDQAFYNADGELMFVPQQGSLRFVTEFGRIDAGPGEIVVIPRGVKFRVELTGGPARGYLCENYGGAFTLPERGPIGANCLANARDFL 241          

HSP 2 Score: 89.3521 bits (220), Expect = 8.187e-50
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLS 299
            Y SGF NSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS +H  R +
Sbjct:   21 YMSGFKNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGSPFTAPRGSNERSWLYRIRPSVKHSGRFA 88          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHOPS (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisB5) GN=hmgA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.187e-50
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            QLRW    +P     F+ G+ T+  AG    + G A HMY  ++SM +  F NADG+ + VPQ+GRL + TE G + + P EIAV+P+G +F V L DGP+RGY+ E +G  F LP+ GPIGAN LA  RDFL
Sbjct:  109 QLRWDAPPMPTEEVTFVQGVRTMTTAGDVNTQAGMAAHMYLISRSMVDQHFYNADGELMFVPQQGRLRLVTEFGVIAIEPAEIAVIPRGVKFRVELVDGPARGYLCENYGGAFTLPERGPIGANCLANSRDFL 241          

HSP 2 Score: 89.7373 bits (221), Expect = 8.187e-50
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLSLECLLMGSW 326
            Y SGFGNSF +EA+ GALP G+NSP    +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS +H  R +     MG W
Sbjct:   21 YMSGFGNSFETEALPGALPVGRNSPQRAAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVKHSGRFAKAD--MGLW 95          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHOP2 (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain HaA2) GN=hmgA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.233e-49
Identity = 63/133 (47.37%), Postives = 83/133 (62.41%), Query Frame = 2
Query:  368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766
            QLRW    +P     F+ G+ T+  AG    + G A HMY   +SM +  F NADG+ + VPQ+G L + TE G + + P EIAV+P+G +F V L DGP+RGY+ E +G  F LP+ GPIGAN LA  RDFL
Sbjct:  109 QLRWDAPSMPQEDLTFLQGVRTMTTAGDVNTQAGMATHMYLITQSMVDQHFYNADGELMFVPQQGSLRLVTEFGVISIEPAEIAVIPRGVKFRVELVDGPARGYLCENYGGAFTLPERGPIGANCLANSRDFL 241          

HSP 2 Score: 89.7373 bits (221), Expect = 5.233e-49
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLSLECLLMGSW 326
            Y SGFGNSF +EA+ GALP G+NSP    +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS +H  R +     MG W
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRAAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVKHSGRFTKAD--MGLW 95          
The following BLAST results are available for this feature:
BLAST of CN189604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_EMENI4.084e-5248.75Homogentisate 1,2-dioxygenase OS=Emericella nidula... [more]
HGD_RHOPB9.045e-5250.38Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHILO2.003e-5153.79Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN... [more]
HGD_NITHX2.611e-5148.12Homogentisate 1,2-dioxygenase OS=Nitrobacter hambu... [more]
HGD_BRAJA5.783e-5144.68Homogentisate 1,2-dioxygenase OS=Bradyrhizobium ja... [more]
HGD_RHOPT2.176e-5047.37Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOPA2.837e-5047.37Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOP58.187e-5047.37Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOPS8.187e-5048.12Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOP25.233e-4947.37Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189604 ID=CN189604; Name=CN189604; organism=Citrus sinensis; type=EST; length=769bp
GAGGGTGAGCTGCTGAGACACAAATGGAGAAGAAGAGTCAACATCAATCA
TCATCATTAATCAGAAAAACGGACGGCGAAGATTTCTCTGATCTGAATTA
CGAATCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGACGGTGCGT
TGCCACGTGGACAGAACAGCCCCCTCGTTTGTCCGTTCGGTCTCTACGCC
GAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCAATCAACG
CAGTTGGTTATACAGAATAAAACCTTCTCAACACATGAACCGTTTAAGCC
TCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAAGTCTAACA
GTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATATCCCTGAT
TCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGGGCTGGCAG
CTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTGCCAACAAAT
CAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTTTGGTAGTT
CCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAACTGGAAGT
CTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTTTGCTGTAA
GTTTACCAGATGGTCCATCACGTGGTTACATCGCAGAGATTTTTGGTACC
CATTTTCAGCTTCCTGATCTTGGTCCAATAGGTGCAAATGGTCTTGCTGC
TCCGAGAGATTTCCTTGTT
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