CN189604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_AGRRK (Homogentisate 1,2-dioxygenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=hmgA PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 7.402e-48 Identity = 66/136 (48.53%), Postives = 85/136 (62.50%), Query Frame = 2 Query: 368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSM-DNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPS---RGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763 QLRW P+ +PD F+DG+ T+ AG + G A H+Y N+ M D+ AF NADG+ L+VPQ G + + TE G ++V P EI ++P+G F V L G RGYI E +G F LPD GPIGAN LA PRDF Sbjct: 110 QLRWGPMPVPDEKLSFLDGVRTMTTAGDVLTQTGMAAHVYVFNEDMVDDYAF-NADGELLIVPQVGAIRVFTEMGIMDVEPLEIVLIPRGMMFKV-LRKGDEKVWRGYICENYGAKFTLPDRGPIGANCLANPRDF 243 HSP 2 Score: 93.5893 bits (231), Expect = 7.402e-48 Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 3 Query: 93 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLS 299 L Y GFGN F +E + GALP+GQNSP C +GLYAEQ+SG+ FT+PR N+RSWLYRI+PS +H R S Sbjct: 19 LQYMPGFGNDFETETLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTRRFS 88
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHIME (Homogentisate 1,2-dioxygenase OS=Rhizobium meliloti GN=hmgA PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 9.647e-48 Identity = 60/134 (44.78%), Postives = 81/134 (60.45%), Query Frame = 2 Query: 368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL--PDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763 QLRW P+ P DF+ G+ T+ AG + + G A H Y N M + F NADG+ L+VP+ G + + TE G+++V P EI ++P+G F V+ + RGYI E +G F LPD GPIGAN LA PRDF Sbjct: 110 QLRWSPLPAPSEALDFLQGIRTMTTAGDALTQAGMAAHAYAFNADMVDDYFFNADGELLIVPETGAIQVFTELGRMDVEPSEICLIPRGMMFKVTRLGEEKVWRGYICENYGAKFTLPDRGPIGANCLANPRDF 243 HSP 2 Score: 90.8929 bits (224), Expect = 9.647e-48 Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 3 Query: 99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNR 293 Y GFGN F +E++ GALP+GQNSP C +GLYAEQ+SG+ FT+PR N+RSWLYRI+PS +H R Sbjct: 21 YMPGFGNDFETESLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTGR 86
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHILW (Homogentisate 1,2-dioxygenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=hmgA PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 9.647e-48 Identity = 62/135 (45.93%), Postives = 82/135 (60.74%), Query Frame = 2 Query: 368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPS---RGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763 QLRW P+ P+ F++G+ TI AG + + G + H Y N+ M + F NADG+ L+VPQ G L + TE G ++V P EI ++P+G F + L G RGYI E +G F LPD GPIGAN LA PRDF Sbjct: 110 QLRWDPIPAPEERLTFLEGVRTITTAGDAATQVGMSAHAYVFNQDMVDDYFFNADGELLIVPQLGALRVFTEMGIMDVEPLEICLIPRGMMFKI-LKTGEQAVWRGYICENYGAKFTLPDRGPIGANCLANPRDF 243 HSP 2 Score: 95.1301 bits (235), Expect = 9.647e-48 Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 3 Query: 87 SDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLS 299 S L Y GFGN F +E++ GALP+GQNSP C +GLYAEQ+SG+ FT+PR N+RSWLYRI+PS +H R S Sbjct: 17 STLKYMPGFGNDFETESLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTRRFS 88
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHIE6 (Homogentisate 1,2-dioxygenase OS=Rhizobium etli (strain CIAT 652) GN=hmgA PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 9.647e-48 Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 2 Query: 368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPS---RGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763 QLRW P+ P+ +F++G+ TI AG + + G + H Y N+ M + F NADG+ L+VPQ G L + TE G ++V P EI ++P+G F + L G RGYI E +G F LP+ GPIGAN LA PRDF Sbjct: 110 QLRWDPIPPPEERLNFLEGVRTITTAGDATTQVGMSAHAYVFNEDMVDDYFFNADGELLIVPQLGALRVFTEMGIMDVEPSEICLVPRGMMFKI-LTSGKQTAWRGYICENYGAKFTLPERGPIGANCLANPRDF 243 HSP 2 Score: 95.1301 bits (235), Expect = 9.647e-48 Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 3 Query: 45 QSSSLIRKTDGEDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLS 299 Q+S D L Y GFGN F +E++ GALP+GQNSP C +GLYAEQ+SG+ FT+PR N+RSWLYRI+PS +H R S Sbjct: 3 QTSIQASSGDAAAADQLKYMPGFGNDFETESLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTRRFS 88
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHIL3 (Homogentisate 1,2-dioxygenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=hmgA PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.639e-47 Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 2 Query: 368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPS---RGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763 QLRW P+ P F++G+ TI AG + + G + H Y N+ M + F NADG+ L+VPQ G + + TE G ++V P EI ++P+G F + L G RGYI E +G F LPD GPIGAN LA PRDF Sbjct: 110 QLRWDPIPAPAERLTFLEGVRTITTAGDAATQVGMSAHAYVFNEDMVDDYFFNADGELLIVPQLGAIRVFTEMGIMDVEPLEICLIPRGMMFKI-LKSGEQTVWRGYICENYGAKFTLPDRGPIGANCLANPRDF 243 HSP 2 Score: 96.2857 bits (238), Expect = 1.639e-47 Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 3 Query: 60 IRKTDGE--DFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLS 299 I+ +DGE + L Y GFGN F +E++ GALP+GQNSP C +GLYAEQ+SG+ FT+PR N+RSWLYRI+PS +H R S Sbjct: 6 IQTSDGEAATANTLKYMPGFGNDFETESLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTRRFS 88
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHISN (Homogentisate 1,2-dioxygenase OS=Rhizobium sp. (strain NGR234) GN=hmgA PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.628e-47 Identity = 61/134 (45.52%), Postives = 81/134 (60.45%), Query Frame = 2 Query: 368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL--PDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763 QLRW P+ P +F+ G+ T+ AG + G A H Y N M + F NADG+ L+VP+ G L + TE GK++V+P EI ++P+G F V+ + RGYI E +G F LPD GPIGAN LA PRDF Sbjct: 108 QLRWNPLPEPTGELNFLQGIRTMTTAGDVLTQVGMAAHAYVFNADMVDDYFFNADGELLIVPEMGALQVFTELGKMDVAPSEICLVPRGTMFKVARLGEEKAWRGYICENYGAKFTLPDRGPIGANCLANPRDF 241 HSP 2 Score: 92.0485 bits (227), Expect = 3.628e-47 Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 3 Query: 93 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLS 299 L Y GFGN F +E++ GALP+GQNSP C +GLYAEQ+SG+ FT+PR N+RSWLYRI+PS +H R + Sbjct: 17 LAYMPGFGNDFETESLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTGRFA 86
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_SINMW (Homogentisate 1,2-dioxygenase OS=Sinorhizobium medicae (strain WSM419) GN=hmgA PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.364e-46 Identity = 59/134 (44.03%), Postives = 79/134 (58.96%), Query Frame = 2 Query: 368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL--PDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763 QLRW P+ P F+ G+ T+ AG + + G A H Y N M + F NADG+ L+VP+ G + TE G+++V P EI ++P+G F V+ + RGYI E +G F LPD GPIGAN LA PRDF Sbjct: 110 QLRWSPLPAPSQSLTFLQGIRTMTTAGDALTQVGMAAHAYAFNADMVDDYFFNADGELLIVPETGAFQVFTELGRIDVEPSEICLVPRGMMFKVTRLGDEKVWRGYICENYGAKFTLPDRGPIGANCLANPRDF 243 HSP 2 Score: 91.2781 bits (225), Expect = 1.364e-46 Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 3 Query: 63 RKTDGEDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLS 299 RK + Y GFGN F +E++ G+LP+GQNSP C +GLYAEQ+SG+ FT+PR N+RSWLYRI+PS +H R + Sbjct: 9 RKAAPDQQRSAGYMPGFGNDFETESLPGSLPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTGRFT 88
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_RHIEC (Homogentisate 1,2-dioxygenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=hmgA PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.364e-46 Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 2 Query: 368 QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL--PDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763 QLRW P+ P+ F+ G+ T+ AG + + G + H Y N+ M + F +ADG+ L+VPQ G + + TE G ++V P EI ++P+G F V SRGYI E +G F LPD GPIGAN LA PRDF Sbjct: 110 QLRWDPIPAPEEKLTFLQGVRTMTTAGDAATQVGMSAHAYVFNEDMVDDYFFDADGELLIVPQLGAIRVFTEMGIMDVEPLEICLVPRGMMFKVMTTGEQTASRGYICENYGAKFTLPDRGPIGANCLANPRDF 243 HSP 2 Score: 93.9745 bits (232), Expect = 1.364e-46 Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 3 Query: 93 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS-QHMNRLS 299 L Y GFGN F +E++ GALP+GQNSP C +GLYAEQ+SG+ FT+PR N+RSWLYRI+PS +H R S Sbjct: 19 LKYMPGFGNDFETESLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTRRFS 88
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_DICDI (Homogentisate 1,2-dioxygenase OS=Dictyostelium discoideum GN=hgd PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 6.177e-45 Identity = 95/180 (52.78%), Postives = 122/180 (67.78%), Query Frame = 2 Query: 230 PSQAQSTQLVIQNKTFSTHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIP-DSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFL 766 P Q + + + H P KP LV D +N + P QLRWKP I D P DF++GL TI GAG + +RHG AIH+YTA KSM+N +F N+DGDFL+VPQ+G L I TE G ++V GEI V+ +G F+V++ +GP+RGYI E+FG+HF+LPDLGPIGANGLA PRDFL Sbjct: 54 PRHTQQRSWLYRIRPSVCHTPLKP---IDSGLVC--DLNNLHVDPNQLRWKPFPITEDKPHDFVEGLITIAGAGHASVRHGLAIHIYTATKSMENKSFYNSDGDFLIVPQQGTLDIQTEFGFMKVKSGEICVIQRGITFSVNV-EGPTRGYICEVFGSHFKLPDLGPIGANGLANPRDFL 227 HSP 2 Score: 95.5153 bits (236), Expect = 3.389e-19 Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 3 Query: 90 DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 D Y+SGFGNSF SEAI G LP+G+N+P CP LYAEQ+SG +FT+PR QRSWLYRI+PS Sbjct: 7 DYEYQSGFGNSFESEAIKGTLPKGRNAPQNCPLDLYAEQLSGNAFTAPRHTQQRSWLYRIRPS 69
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_LEGPL (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Lens) GN=hmgA PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.081e-39 Identity = 58/136 (42.65%), Postives = 78/136 (57.35%), Query Frame = 2 Query: 359 TPTQLRWKPV-DIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763 +P +RW P+ + DF++GL+ I G S L + Y Y N SM + F N DG+ L VP G + + TE GKL +S G IAV+P+G +F V + ++GY+ E G LP LGPIGANGLA PR F Sbjct: 83 SPNAMRWSPLYNSSQIKCDFVEGLFHIAG---SPLVNAYT---YYCNHSMSDKYFANNDGELLFVPYTGEIHLHTEFGKLMLSSGSIAVIPRGVKFKVEVISKEAKGYLCENSGNPLTLPQLGPIGANGLANPRHF 212 HSP 2 Score: 82.8037 bits (203), Expect = 1.081e-39 Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278 Y GFGN SEA+ GALP QNSP C GLYAEQ+SGTSFT PR N RSWLYRI P+ Sbjct: 2 YLQGFGNYHHSEAVKGALPPNQNSPQHCSLGLYAEQLSGTSFTRPRHNNLRSWLYRILPT 61 The following BLAST results are available for this feature:
BLAST of CN189604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189604 ID=CN189604; Name=CN189604; organism=Citrus sinensis; type=EST; length=769bpback to top |