CN189604

Overview
NameCN189604
Unique NameCN189604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2496 contig Csv1_Contig2496:8..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_LEGPA (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Paris) GN=hmgA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.408e-39
Identity = 57/136 (41.91%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  359 TPTQLRWKPV-DIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            +P  +RW P+ +      DF++GL+ I  AGS  +      + Y  N SM +  F N DG+ L VP  G + + TE GKL +S G IAV+P+G +F V +    ++GY+ E  G    LP LGPIGANGLA PR F
Sbjct:   83 SPNAMRWSPLYNSSQIKCDFVEGLFHI--AGSPLVN----TYTYYCNHSMSDKYFANNDGELLFVPYAGEIHLHTEFGKLILSSGSIAVIPRGVKFKVEVISKEAKGYLCENSGNPLTLPQLGPIGANGLANPRHF 212          

HSP 2 Score: 83.1889 bits (204), Expect = 1.408e-39
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            Y  GFGN   SEA+ GALP  QNSP  C  GLYAEQ+SGTSFT PR  N RSWLYRI P+
Sbjct:    2 YLQGFGNYHHSEAVKGALPTNQNSPQHCSLGLYAEQLSGTSFTRPRHNNLRSWLYRILPT 61          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_LEGPC (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Corby) GN=hmgA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.390e-39
Identity = 60/148 (40.54%), Postives = 84/148 (56.76%), Query Frame = 2
Query:  332 EFDKSNSYT---TPTQLRWKPV-DIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            EF+  +S+    +P  +RW P+ +      DF++GL+ I  AGS  +      + Y  N SM +  F N DG+ L VP  G + + TE GKL +S G IAV+P+G +F V +    ++GY+ E  G    LP LGPIGANGLA PR F
Sbjct:   71 EFNIMHSFVDEFSPNAMRWSPLYNSSQIKCDFVEGLFHI--AGSPLVN----TYTYYCNHSMSDKYFANNDGELLFVPYAGEIHLYTEFGKLMLSSGSIAVIPRGVKFKVEVISKEAKGYLCENSGNPLTLPQLGPIGANGLANPRHF 212          

HSP 2 Score: 81.2629 bits (199), Expect = 2.390e-39
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            Y  GFGN   SEA+ GALP  QNSP  C  GLYAEQ+SGT+FT PR  N RSWLYRI P+
Sbjct:    2 YLQGFGNYHHSEAVKGALPPNQNSPQHCNLGLYAEQLSGTAFTRPRHNNLRSWLYRILPT 61          
BLAST of CN189604 vs. ExPASy Swiss-Prot
Match: HGD_LEGPH (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hmgA PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.114e-39
Identity = 57/136 (41.91%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  359 TPTQLRWKPV-DIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDF 763
            +P  +RW P+ +      DF++GL+ I  AGS  +      + Y  N SM +  F N DG+ L VP  G + + TE GKL +S G IAV+P+G +F V +    ++GY+ E  G    LP LGPIGANGLA PR F
Sbjct:   83 SPNAMRWSPLYNSSQIKCDFVEGLFHI--AGSPLVN----TYTYYCNHSMSDKYFANNDGELLFVPYAGEIHLHTEFGKLMLSSGSIAVIPRGVKFKVEVISKEAKGYLCENSGNPLTLPQLGPIGANGLANPRHF 212          

HSP 2 Score: 81.6481 bits (200), Expect = 3.114e-39
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   99 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPS 278
            Y  GFGN   SEA+ GALP  QNSP  C  GLYAEQ+SGT+FT PR  N RSWLYRI P+
Sbjct:    2 YLQGFGNYHHSEAVKGALPPNQNSPQHCSLGLYAEQLSGTAFTRPRHNNLRSWLYRILPT 61          
The following BLAST results are available for this feature:
BLAST of CN189604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_LEGPA1.408e-3941.91Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPC2.390e-3940.54Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPH3.114e-3941.91Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189604 ID=CN189604; Name=CN189604; organism=Citrus sinensis; type=EST; length=769bp
GAGGGTGAGCTGCTGAGACACAAATGGAGAAGAAGAGTCAACATCAATCA
TCATCATTAATCAGAAAAACGGACGGCGAAGATTTCTCTGATCTGAATTA
CGAATCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGACGGTGCGT
TGCCACGTGGACAGAACAGCCCCCTCGTTTGTCCGTTCGGTCTCTACGCC
GAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCAATCAACG
CAGTTGGTTATACAGAATAAAACCTTCTCAACACATGAACCGTTTAAGCC
TCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAAGTCTAACA
GTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATATCCCTGAT
TCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGGGCTGGCAG
CTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTGCCAACAAAT
CAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTTTGGTAGTT
CCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAACTGGAAGT
CTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTTTGCTGTAA
GTTTACCAGATGGTCCATCACGTGGTTACATCGCAGAGATTTTTGGTACC
CATTTTCAGCTTCCTGATCTTGGTCCAATAGGTGCAAATGGTCTTGCTGC
TCCGAGAGATTTCCTTGTT
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