CN189603

Overview
NameCN189603
Unique NameCN189603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEAB (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hmgA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.988e-43
Identity = 83/142 (58.45%), Postives = 108/142 (76.06%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA GF+PGGASLHSCM+ HGPD ++ +  IA  ++  P++I  TMAFMFE+  + R    ALE+P + +DY  CW  L S F+
Sbjct:  289 DPSIFTVLTSPTSVHGLANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAGGFVPGGASLHSCMSAHGPDAESCDKAIA--ADLKPHRIDQTMAFMFETSQVLRPSRAALETPALQNDYDACWASLVSTFN 428          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEA7 (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain PA7) GN=hmgA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.988e-43
Identity = 83/142 (58.45%), Postives = 108/142 (76.06%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA GF+PGGASLHSCM+ HGPD ++ +  IA  ++  P++I  TMAFMFE+  + R    ALE+P + +DY  CW  L S F+
Sbjct:  289 DPSIFTVLTSPTSVHGLANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAGGFVPGGASLHSCMSAHGPDAESCDKAIA--ADLRPHRIDQTMAFMFETSQVLRPSRAALETPALQNDYDACWASLVSTFN 428          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURM1 (Homogentisate 1,2-dioxygenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=hmgA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.514e-43
Identity = 80/145 (55.17%), Postives = 105/145 (72.41%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + TD PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+ +TMAFMFE+  + R   +AL++  +  +Y+ CW G+R HF+ E+
Sbjct:  300 DPSIFLVLHSQTDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDNTMAFMFETRTLIRPTRYALDTAQLQANYFECWQGIRKHFNPEQ 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_XANCP (Homogentisate 1,2-dioxygenase OS=Xanthomonas campestris pv. campestris GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 82/141 (58.16%), Postives = 102/141 (72.34%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKADGF PGGASLH+CM+ HGPD  T++   ++   + P  IT+TMAFMFE+  + R    AL +P    DY +CW GLR  F
Sbjct:  310 DPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKADGFAPGGASLHNCMSGHGPDAATFDKA-SQADLSRPDVITETMAFMFETRAVLRPTAQALHAPHRQGDYQQCWAGLRKAF 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_XANC8 (Homogentisate 1,2-dioxygenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 82/141 (58.16%), Postives = 102/141 (72.34%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKADGF PGGASLH+CM+ HGPD  T++   ++   + P  IT+TMAFMFE+  + R    AL +P    DY +CW GLR  F
Sbjct:  310 DPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKADGFAPGGASLHNCMSGHGPDAATFDKA-SQADLSRPDVITETMAFMFETRAVLRPTAQALHAPHRQGDYQQCWAGLRKAF 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RALEJ (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain JMP134) GN=hmgA PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 82/142 (57.75%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI  VL +P+D PGV  +DFVIF PRWL  E++FRPP++HRN  SEFMGLI G Y+AKADGF PGGASLH+CM+ HGPD  T+ A       + P+ ITDTMAFMFE+  + R  P+A  S  +  DYY CW GL+ HF+
Sbjct:  295 DPSIFLVLQSPSDTPGVDTIDFVIFGPRWLAMENSFRPPWFHRNIASEFMGLITGVYDAKADGFAPGGASLHNCMSGHGPDADTF-AKATSADTSTPHHITDTMAFMFETPGVIRPTPYAARSASLQQDYYTCWQGLKKHFN 435          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURCM (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 80/145 (55.17%), Postives = 104/145 (71.72%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY+ CW G+R HF+ E+
Sbjct:  300 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQPDYFECWQGIRKHFNPEQ 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURCH (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain HI2424) GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 80/145 (55.17%), Postives = 104/145 (71.72%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL A +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY+ CW G++ HF+ E+
Sbjct:  300 DPSIFLVLQAQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIKKHFNPEQ 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURCA (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain AU 1054) GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 80/145 (55.17%), Postives = 104/145 (71.72%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL A +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY+ CW G++ HF+ E+
Sbjct:  300 DPSIFLVLQAQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIKKHFNPEQ 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURA4 (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain MC40-6) GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 80/145 (55.17%), Postives = 104/145 (71.72%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY+ CW G+R HF+ E+
Sbjct:  300 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIRKHFNPEQ 443          
The following BLAST results are available for this feature:
BLAST of CN189603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_PSEAB4.988e-4358.45Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEA74.988e-4358.45Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_BURM16.514e-4355.17Homogentisate 1,2-dioxygenase OS=Burkholderia mult... [more]
HGD_XANCP8.508e-4358.16Homogentisate 1,2-dioxygenase OS=Xanthomonas campe... [more]
HGD_XANC88.508e-4358.16Homogentisate 1,2-dioxygenase OS=Xanthomonas campe... [more]
HGD_RALEJ8.508e-4357.75Homogentisate 1,2-dioxygenase OS=Ralstonia eutroph... [more]
HGD_BURCM8.508e-4355.17Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]
HGD_BURCH8.508e-4355.17Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURCA8.508e-4355.17Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURA48.508e-4355.17Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189603 ID=CN189603; Name=CN189603; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTAAATTTTTTTACATCAATTATATATGTACATCCAA
GTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATAT
ATAACCCAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTG
TTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCATGCCTGGGGA
CCAAATCAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTC
CCCATCGCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATC
CAATCCAGCACCGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCC
CAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGT
ATCAGTGATCTTGTATGGCCCAGCCTCGCTTCCACGTGCAATGGTGGCCT
CATATGTCTTCGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTC
GCACCACCTGGGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTAT
CAGACCCATAAACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGA
ATGTATGCTCTGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGC
AATGCCACACCAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGA
TGGATC
back to top