CN189603

Overview
NameCN189603
Unique NameCN189603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BORPE (Homogentisate 1,2-dioxygenase OS=Bordetella pertussis GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 88/147 (59.86%), Postives = 107/147 (72.79%), Query Frame = -1
Query:  269 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEA 706
            DPSI TVLT+P+D PG A +DF IFPPR L  E+TFRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD  T+E A+ A  S+A  + I DTMAFMFE+  + R    AL SP    DYY+CW GL+ HF  E+A
Sbjct:  288 DPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQA--HYIRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BORPA (Homogentisate 1,2-dioxygenase OS=Bordetella parapertussis GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 88/147 (59.86%), Postives = 107/147 (72.79%), Query Frame = -1
Query:  269 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEA 706
            DPSI TVLT+P+D PG A +DF IFPPR L  E+TFRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD  T+E A+ A  S+A  + I DTMAFMFE+  + R    AL SP    DYY+CW GL+ HF  E+A
Sbjct:  288 DPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQA--HYIRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BORBR (Homogentisate 1,2-dioxygenase OS=Bordetella bronchiseptica GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 88/147 (59.86%), Postives = 107/147 (72.79%), Query Frame = -1
Query:  269 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEA 706
            DPSI TVLT+P+D PG A +DF IFPPR L  E+TFRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD  T+E A+ A  S+A  + I DTMAFMFE+  + R    AL SP    DYY+CW GL+ HF  E+A
Sbjct:  288 DPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQA--HYIRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEPK (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain KT2440) GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.111e-42
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GFLPGGASLH  M+ HGPD +T E  IA  ++  P+KI +TMAFMFE+  + R    ALE P +  DY  CW  L S F+
Sbjct:  290 DPSIFTVLTSPTSVHGMANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLINGAYDAKAEGFLPGGASLHGVMSAHGPDAETCEKAIA--ADLAPHKIDNTMAFMFETSQVLRPSLQALECPQLQADYDSCWATLPSTFN 429          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEPG (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain GB-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.111e-42
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GFLPGGASLH  M+ HGPD +T E  IA  ++  P+KI +TMAFMFE+  + R    ALE P +  DY  CW  L S F+
Sbjct:  290 DPSIFTVLTSPTSVHGLANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLINGAYDAKAEGFLPGGASLHGVMSAHGPDAETCEKAIA--ADLAPHKIDNTMAFMFETSQVLRPSLQALECPQLQADYDSCWATLPSTFN 429          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEP1 (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.111e-42
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GFLPGGASLH  M+ HGPD +T E  IA  ++  P+KI +TMAFMFE+  + R    ALE P +  DY  CW  L S F+
Sbjct:  290 DPSIFTVLTSPTSVHGMANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLINGAYDAKAEGFLPGGASLHGVMSAHGPDAETCEKAIA--ADLAPHKIDNTMAFMFETSQVLRPSLQALECPQLQADYDSCWATLPSTFN 429          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURCC (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain MC0-3) GN=hmgA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.111e-42
Identity = 80/145 (55.17%), Postives = 104/145 (71.72%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL A +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY+ CW G++ HF+ E+
Sbjct:  300 DPSIFLVLQAQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTCYALDTAQLQADYFECWQGIKKHFNPEQ 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEPW (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain W619) GN=hmgA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GFLPGGASLH  M+ HGPD +T E  IA  ++  P+KI +TMAFMFE+  + R    ALE P +  DY  CW  L S F+
Sbjct:  290 DPSIFTVLTSPTSVHGLANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLISGAYDAKAEGFLPGGASLHGVMSAHGPDAETCEKAIA--ADLAPHKIDNTMAFMFETSQVLRPSLQALECPQLQADYDSCWATLPSTFN 429          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEE4 (Homogentisate 1,2-dioxygenase OS=Pseudomonas entomophila (strain L48) GN=hmgA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 84/142 (59.15%), Postives = 106/142 (74.65%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA+GFLPGGASLH  M+ HGPD +T +  I+   +  P+KI +TMAFMFE+  + R    ALESP +  DY  CW  L S F+
Sbjct:  290 DPSIFTVLTSPTSVHGMANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAEGFLPGGASLHGVMSAHGPDAETCDKAIS--VDLAPHKIDNTMAFMFETSQVLRPSRQALESPQLQADYDSCWATLPSTFN 429          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURS3 (Homogentisate 1,2-dioxygenase OS=Burkholderia sp. (strain 383) GN=hmgA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 79/145 (54.48%), Postives = 104/145 (71.72%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY+ CW G++ HF+ E+
Sbjct:  300 DPSIFLVLQSQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIKKHFNPEQ 443          
The following BLAST results are available for this feature:
BLAST of CN189603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_BORPE8.508e-4359.86Homogentisate 1,2-dioxygenase OS=Bordetella pertus... [more]
HGD_BORPA8.508e-4359.86Homogentisate 1,2-dioxygenase OS=Bordetella parape... [more]
HGD_BORBR8.508e-4359.86Homogentisate 1,2-dioxygenase OS=Bordetella bronch... [more]
HGD_PSEPK1.111e-4259.86Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEPG1.111e-4259.86Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEP11.111e-4259.86Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_BURCC1.111e-4255.17Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_PSEPW1.451e-4259.86Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEE41.895e-4259.15Homogentisate 1,2-dioxygenase OS=Pseudomonas entom... [more]
HGD_BURS31.895e-4254.48Homogentisate 1,2-dioxygenase OS=Burkholderia sp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189603 ID=CN189603; Name=CN189603; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTAAATTTTTTTACATCAATTATATATGTACATCCAA
GTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATAT
ATAACCCAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTG
TTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCATGCCTGGGGA
CCAAATCAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTC
CCCATCGCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATC
CAATCCAGCACCGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCC
CAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGT
ATCAGTGATCTTGTATGGCCCAGCCTCGCTTCCACGTGCAATGGTGGCCT
CATATGTCTTCGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTC
GCACCACCTGGGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTAT
CAGACCCATAAACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGA
ATGTATGCTCTGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGC
AATGCCACACCAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGA
TGGATC
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