CN189603

Overview
NameCN189603
Unique NameCN189603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BORA1 (Homogentisate 1,2-dioxygenase OS=Bordetella avium (strain 197N) GN=hmgA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 87/147 (59.18%), Postives = 109/147 (74.15%), Query Frame = -1
Query:  269 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEA 706
            DPSI TVLT+P+D PG A LDF IFPPR L  E+TFRPP++HRN  SEFMGLI+G Y+AKA+GF PGGASLH+CM+ HGPD  T+E A++A  S+A  + I DTMAFMFE+  + R    AL S  +  DYY+CW  L+ HF+ E+A
Sbjct:  288 DPSIFTVLTSPSDTPGTANLDFAIFPPRILAMENTFRPPWFHRNIASEFMGLIQGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASVADTSKA--HYIRDTMAFMFETRRVIRPTRQALASAQLQGDYYQCWQDLKKHFNPEKA 432          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_AGRRK (Homogentisate 1,2-dioxygenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=hmgA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 83/141 (58.87%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLTAPT+  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A  SE  P K+  TMAFMFE+    ++  +A E   +  +Y  CW GL   F
Sbjct:  308 DPSIFTVLTAPTESAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGISLHNMMLPHGPDASGFEK--ASNSELKPVKLDHTMAFMFETRYPQQVTKYAAELETLQDNYLECWDGLERRF 446          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_CAUSK (Homogentisate 1,2-dioxygenase OS=Caulobacter sp. (strain K31) GN=hmgA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.515e-42
Identity = 82/136 (60.29%), Postives = 102/136 (75.00%), Query Frame = -1
Query:  299 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIG 706
            DPSI TVLTAP++ PG A +DFVIFPPRW+VAEHTFRPP++HRN MSEFMGL+ G Y+AKA GF PGGASLH+ M+ HGPD  +++A  A  ++  P+KI  TMAFMFES  + R   +ALE+  +  DY  CW G
Sbjct:  287 DPSIFTVLTAPSEIPGTANVDFVIFPPRWMVAEHTFRPPWFHRNVMSEFMGLVTGAYDAKAGGFSPGGASLHNMMSDHGPDVASHKA--ASEADLSPHKIEATMAFMFESRWVIRPTKYALETSELQADYDACWTG 420          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHISN (Homogentisate 1,2-dioxygenase OS=Rhizobium sp. (strain NGR234) GN=hmgA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 82/142 (57.75%), Postives = 100/142 (70.42%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLTAP+ + G A +DFV+FPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M  HGPDT  +E   A   E  P K+ +TMAFMFE+    ++  +A E   +  DY  CW GLR  F+
Sbjct:  306 DPSIFTVLTAPSGEEGTANVDFVLFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGRYDAKEEGFVPGGMSLHNMMLAHGPDTSGFEK--ATNGELKPVKLDNTMAFMFETRFPQQLTRFAAELETLQDDYIDCWAGLRKRFN 445          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURTA (Homogentisate 1,2-dioxygenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hmgA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 80/145 (55.17%), Postives = 106/145 (73.10%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y+ CW GL+ HF+ E+
Sbjct:  306 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASAIDT-SRPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_XANOR (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae GN=hmgA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 81/148 (54.73%), Postives = 103/148 (69.59%), Query Frame = -1
Query:  263 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEADN 706
            DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I +TMAFMFE+  + R    AL +     DY +CW GLR+ F +  A N
Sbjct:  289 DPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIAETMAFMFETRAVLRPTQQALSAAHRQADYQQCWSGLRAAFQHPPAKN 435          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_XANOP (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=hmgA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 81/148 (54.73%), Postives = 103/148 (69.59%), Query Frame = -1
Query:  263 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEADN 706
            DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I +TMAFMFE+  + R    AL +     DY +CW GLR+ F +  A N
Sbjct:  289 DPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIAETMAFMFETRAVLRPTQQALSAAHRQADYQQCWSGLRAAFQHPPAKN 435          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_XANOM (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=hmgA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 81/148 (54.73%), Postives = 103/148 (69.59%), Query Frame = -1
Query:  263 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEADN 706
            DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I +TMAFMFE+  + R    AL +     DY +CW GLR+ F +  A N
Sbjct:  289 DPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIAETMAFMFETRAVLRPTQQALSAAHRQADYQQCWSGLRAAFQHPPAKN 435          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BORPD (Homogentisate 1,2-dioxygenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=hmgA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 86/142 (60.56%), Postives = 102/142 (71.83%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P+D PG A +DF IFPPR L  E+TFRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD  T+E AT A  S+A  + I DTMAFMFE+  + R    AL S  +  DYY CW GL  HF
Sbjct:  288 DPSIFTVLTSPSDTPGTANMDFAIFPPRVLAMENTFRPPWFHRNVASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKATAADTSQA--HYIRDTMAFMFETRRVIRPTAQALASAQLQSDYYECWQGLNKHF 427          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHILW (Homogentisate 1,2-dioxygenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.229e-41
Identity = 82/141 (58.16%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI +VLTAPT+  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A  +E  P K+  TMAFMFE+    ++  +A E   +  DY  CW GL   F
Sbjct:  308 DPSIFSVLTAPTEDAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGMSLHNMMLPHGPDALAFEK--AANAELKPVKLDHTMAFMFETRYPQQLTKYAAELETLQDDYLECWDGLERKF 446          
The following BLAST results are available for this feature:
BLAST of CN189603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_BORA13.233e-4259.18Homogentisate 1,2-dioxygenase OS=Bordetella avium ... [more]
HGD_AGRRK3.233e-4258.87Homogentisate 1,2-dioxygenase OS=Agrobacterium rad... [more]
HGD_CAUSK5.515e-4260.29Homogentisate 1,2-dioxygenase OS=Caulobacter sp. (... [more]
HGD_RHISN7.202e-4257.75Homogentisate 1,2-dioxygenase OS=Rhizobium sp. (st... [more]
HGD_BURTA7.202e-4255.17Homogentisate 1,2-dioxygenase OS=Burkholderia thai... [more]
HGD_XANOR9.407e-4254.73Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_XANOP9.407e-4254.73Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_XANOM9.407e-4254.73Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_BORPD9.407e-4260.56Homogentisate 1,2-dioxygenase OS=Bordetella petrii... [more]
HGD_RHILW1.229e-4158.16Homogentisate 1,2-dioxygenase OS=Rhizobium legumin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189603 ID=CN189603; Name=CN189603; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTAAATTTTTTTACATCAATTATATATGTACATCCAA
GTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATAT
ATAACCCAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTG
TTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCATGCCTGGGGA
CCAAATCAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTC
CCCATCGCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATC
CAATCCAGCACCGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCC
CAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGT
ATCAGTGATCTTGTATGGCCCAGCCTCGCTTCCACGTGCAATGGTGGCCT
CATATGTCTTCGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTC
GCACCACCTGGGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTAT
CAGACCCATAAACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGA
ATGTATGCTCTGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGC
AATGCCACACCAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGA
TGGATC
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