CN189603

Overview
NameCN189603
Unique NameCN189603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHIE6 (Homogentisate 1,2-dioxygenase OS=Rhizobium etli (strain CIAT 652) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.229e-41
Identity = 82/141 (58.16%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI +VLTAPT+  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A  +E  P K+  TMAFMFE+    ++  +A E   +  DY  CW GL   F
Sbjct:  308 DPSIFSVLTAPTEDAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGMSLHNMMLPHGPDALAFEK--AANAELKPVKLDHTMAFMFETRYPQQLTKYAAELETLQDDYLECWDGLERKF 446          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RALEH (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI  VL +P+  PGV  +DFVIF PRWL  + +FRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD +T+E   A    + P++I DTMAFMFE+  + R  P+A +S  +  DYY CW GL+ HF+
Sbjct:  295 DPSIFLVLQSPSATPGVDTIDFVIFGPRWLAMQDSFRPPWFHRNIASEFMGLITGVYDAKAEGFAPGGASLHNCMSGHGPDAETFEKASA-ADTSKPHRIEDTMAFMFETPGVIRPTPYAAQSASLQQDYYTCWQGLKKHFN 435          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURPS (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y+ CW GL+ HF+ E+
Sbjct:  306 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURP1 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1710b) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y+ CW GL+ HF+ E+
Sbjct:  306 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURP0 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1106a) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y+ CW GL+ HF+ E+
Sbjct:  306 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURMS (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain SAVP1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y+ CW GL+ HF+ E+
Sbjct:  306 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURMA (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y+ CW GL+ HF+ E+
Sbjct:  306 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURM9 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10229) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y+ CW GL+ HF+ E+
Sbjct:  306 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURM7 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10247) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y+ CW GL+ HF+ E+
Sbjct:  306 DPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RALPJ (Homogentisate 1,2-dioxygenase OS=Ralstonia pickettii (strain 12J) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 79/141 (56.03%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI  VL +P+  PGV  +DFVIFPPRWL AE+TFRPP++HRN  SEFMGLI+G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +      P+K+  TMAFMFE+  + R   +A ES  +   Y+ CW GL+ HF
Sbjct:  304 DPSIFLVLQSPSATPGVDTIDFVIFPPRWLAAENTFRPPWFHRNVASEFMGLIQGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKA-SNSDTTKPHKVDATMAFMFETPAVIRPTRFAAESAQLQAKYFECWQGLKKHF 443          
The following BLAST results are available for this feature:
BLAST of CN189603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_RHIE61.229e-4158.16Homogentisate 1,2-dioxygenase OS=Rhizobium etli (s... [more]
HGD_RALEH1.605e-4155.63Homogentisate 1,2-dioxygenase OS=Ralstonia eutroph... [more]
HGD_BURPS1.605e-4154.48Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURP11.605e-4154.48Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURP01.605e-4154.48Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURMS1.605e-4154.48Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURMA1.605e-4154.48Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURM91.605e-4154.48Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURM71.605e-4154.48Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_RALPJ2.096e-4156.03Homogentisate 1,2-dioxygenase OS=Ralstonia pickett... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189603 ID=CN189603; Name=CN189603; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTAAATTTTTTTACATCAATTATATATGTACATCCAA
GTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATAT
ATAACCCAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTG
TTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCATGCCTGGGGA
CCAAATCAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTC
CCCATCGCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATC
CAATCCAGCACCGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCC
CAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGT
ATCAGTGATCTTGTATGGCCCAGCCTCGCTTCCACGTGCAATGGTGGCCT
CATATGTCTTCGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTC
GCACCACCTGGGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTAT
CAGACCCATAAACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGA
ATGTATGCTCTGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGC
AATGCCACACCAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGA
TGGATC
back to top