CN189603

Overview
NameCN189603
Unique NameCN189603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_DROME (Homogentisate 1,2-dioxygenase OS=Drosophila melanogaster GN=hgo PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 84/143 (58.74%), Postives = 100/143 (69.93%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALES-PFMDHDYYRCWIGLRSHF 706
            DPSI TVLT P+ + G A+ DFVIFPPRW V EHTFRPPYYHRNCMSEFMGLI G YEAK DGF  GGA+LHS MTPHGPD K +E   A  ++  P ++ + T AFMFES L   +  W  E+   +D  YY CW  L+++F
Sbjct:  294 DPSIFTVLTCPSLRAGTAIADFVIFPPRWSVQEHTFRPPYYHRNCMSEFMGLILGKYEAKEDGFAAGGATLHSMMTPHGPDVKCFEG--ASNAKLVPERVAEGTQAFMFESSLSLAVTKWGEETCQKLDAAYYECWQALKNNF 434          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_CAUCR (Homogentisate 1,2-dioxygenase OS=Caulobacter crescentus GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 83/136 (61.03%), Postives = 98/136 (72.06%), Query Frame = -1
Query:  299 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIG 706
            DPSI TVLT+P+D PG A  DFVIFPPRW+VAE TFRPP++HRN MSEFMGLI G Y+AKA GF+PGGASLH+CM+ HGPD  +++   A      P+KI  TMAFMFES  + R    ALES  +  DY  CW G
Sbjct:  285 DPSIFTVLTSPSDTPGTANCDFVIFPPRWMVAEDTFRPPWFHRNVMSEFMGLIHGAYDAKAGGFVPGGASLHNCMSDHGPDVASHKK--ATEVVLAPHKIDGTMAFMFESRWVFRPTHLALESAALQSDYDACWTG 418          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_CAUCN (Homogentisate 1,2-dioxygenase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 83/136 (61.03%), Postives = 98/136 (72.06%), Query Frame = -1
Query:  299 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIG 706
            DPSI TVLT+P+D PG A  DFVIFPPRW+VAE TFRPP++HRN MSEFMGLI G Y+AKA GF+PGGASLH+CM+ HGPD  +++   A      P+KI  TMAFMFES  + R    ALES  +  DY  CW G
Sbjct:  285 DPSIFTVLTSPSDTPGTANCDFVIFPPRWMVAEDTFRPPWFHRNVMSEFMGLIHGAYDAKAGGFVPGGASLHNCMSDHGPDVASHKK--ATEVVLAPHKIDGTMAFMFESRWVFRPTHLALESAALQSDYDACWTG 418          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURCJ (Homogentisate 1,2-dioxygenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 78/145 (53.79%), Postives = 103/145 (71.03%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL A +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ H PD  T+E   +      P+K+  TMAFMFE+  + R   +AL++  +  DY+ CW G++ HF+ E+
Sbjct:  300 DPSIFLVLQAQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHRPDADTFEKA-SVSDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIKKHFNPEQ 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHIEC (Homogentisate 1,2-dioxygenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 82/141 (58.16%), Postives = 97/141 (68.79%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI +VLTAPT+  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A   E  P K+  TMAFMFE+    ++  +A E   +  DY  CW GL   F
Sbjct:  308 DPSIFSVLTAPTEDAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGISLHNMMLPHGPDALAFEK--ASNVELKPVKLDHTMAFMFETRYPQQLTKYAAELETLQDDYLECWDGLERKF 446          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RALSO (Homogentisate 1,2-dioxygenase OS=Ralstonia solanacearum GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 79/141 (56.03%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI  VL + +D PGV  +DFVIFPPRWL  EH+FRPP++HRN  SEFMGLI+G Y+AKA+GF+PGGASLH+CMT HGPD +T+E   +      P+K+  TMAFMFE+  + R   +A ES  +   Y+ CW GL+ HF
Sbjct:  304 DPSIFLVLQSVSDTPGVDAIDFVIFPPRWLAMEHSFRPPWFHRNIASEFMGLIQGVYDAKAEGFVPGGASLHNCMTGHGPDAETFEKA-SHADTTQPHKVEATMAFMFETRGVIRPTRFAAESAQLQARYFECWQGLKKHF 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEPF (Homogentisate 1,2-dioxygenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 83/141 (58.87%), Postives = 105/141 (74.47%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+PT   G+A LDFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA+GF+PGGASLHSCM+ HGPD +T   T A  ++  P KI +TMAFMFE+  + R   +AL+ P +   Y  CW  L + F
Sbjct:  288 DPSIFTVLTSPTSVHGLANLDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGEYDAKAEGFVPGGASLHSCMSAHGPDGET--CTKAINADLKPAKIDNTMAFMFETSQVLRPSRFALDCPQLQSTYDACWATLPATF 426          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_XANC5 (Homogentisate 1,2-dioxygenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.574e-41
Identity = 80/141 (56.74%), Postives = 100/141 (70.92%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I DTMAFMFE+  + R    AL +     DY +CW GLR+ F
Sbjct:  291 DPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIADTMAFMFETRAVLRPTQQALNAAHRQADYQQCWSGLRAAF 430          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_XANAC (Homogentisate 1,2-dioxygenase OS=Xanthomonas axonopodis pv. citri GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.574e-41
Identity = 80/141 (56.74%), Postives = 100/141 (70.92%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I DTMAFMFE+  + R    AL +     DY +CW GLR+ F
Sbjct:  310 DPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIADTMAFMFETRAVLRPTQQALSAAHRQADYQQCWSGLRAAF 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BURVG (Homogentisate 1,2-dioxygenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.574e-41
Identity = 78/145 (53.79%), Postives = 103/145 (71.03%), Query Frame = -1
Query:  272 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 706
            DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A  +   P+K+  TMAFMFE+  + R   +AL++  +  DY+ CW  +  HF+ E+
Sbjct:  300 DPSIFLVLQSQSDSPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASAIDT-TRPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQRIEKHFNPEQ 443          
The following BLAST results are available for this feature:
BLAST of CN189603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_DROME2.096e-4158.74Homogentisate 1,2-dioxygenase OS=Drosophila melano... [more]
HGD_CAUCR2.096e-4161.03Homogentisate 1,2-dioxygenase OS=Caulobacter cresc... [more]
HGD_CAUCN2.096e-4161.03Homogentisate 1,2-dioxygenase OS=Caulobacter cresc... [more]
HGD_BURCJ2.096e-4153.79Homogentisate 1,2-dioxygenase OS=Burkholderia cepa... [more]
HGD_RHIEC2.737e-4158.16Homogentisate 1,2-dioxygenase OS=Rhizobium etli (s... [more]
HGD_RALSO2.737e-4156.03Homogentisate 1,2-dioxygenase OS=Ralstonia solanac... [more]
HGD_PSEPF2.737e-4158.87Homogentisate 1,2-dioxygenase OS=Pseudomonas fluor... [more]
HGD_XANC53.574e-4156.74Homogentisate 1,2-dioxygenase OS=Xanthomonas campe... [more]
HGD_XANAC3.574e-4156.74Homogentisate 1,2-dioxygenase OS=Xanthomonas axono... [more]
HGD_BURVG3.574e-4153.79Homogentisate 1,2-dioxygenase OS=Burkholderia viet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189603 ID=CN189603; Name=CN189603; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTAAATTTTTTTACATCAATTATATATGTACATCCAA
GTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATAT
ATAACCCAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTG
TTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCATGCCTGGGGA
CCAAATCAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTC
CCCATCGCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATC
CAATCCAGCACCGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCC
CAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGT
ATCAGTGATCTTGTATGGCCCAGCCTCGCTTCCACGTGCAATGGTGGCCT
CATATGTCTTCGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTC
GCACCACCTGGGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTAT
CAGACCCATAAACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGA
ATGTATGCTCTGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGC
AATGCCACACCAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGA
TGGATC
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