CN189603

Overview
NameCN189603
Unique NameCN189603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHIL3 (Homogentisate 1,2-dioxygenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=hmgA PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 80/141 (56.74%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI +VLTAP++  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A  +E  P K+  TMAFMFE+    ++  +A E   +  +Y  CW GL   F
Sbjct:  308 DPSIFSVLTAPSEDAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGISLHNMMLPHGPDALAFEK--ASNTELKPVKLDHTMAFMFETRYAQQLTKYAAELETLQDNYLECWDGLERKF 446          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_CAEEL (Homogentisate 1,2-dioxygenase OS=Caenorhabditis elegans GN=hgo-1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 84/143 (58.74%), Postives = 102/143 (71.33%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLTAP+ K G A+ DFVIFPPRW  A++TFRPPYYHRNCMSE+MGLI G YEAK  GF PGG SLHS MTPHGPD   +E  +A  ++  P ++ + TM+FMFES L   I  WA+    +D DYY+ W  L+ HF+
Sbjct:  295 DPSIFTVLTAPSVKHGTAIADFVIFPPRWGCADNTFRPPYYHRNCMSEYMGLITGCYEAKEGGFKPGGGSLHSMMTPHGPDFNCFE--MASNADLKPQRVAEGTMSFMFESSLNMAITNWAVYQN-VDKDYYKDWQPLKKHFT 434          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHOP5 (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisA53) GN=hmgA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 80/141 (56.74%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLTAP++ PG A +DFVIFP RW+VA++TFRPP+YH N MSEFMGLI G Y+AK  GF+PGGASLH+ M PHGPD + ++   A   E  P K+T TMAFMFE+    R+  +A  S  +  DY  CW GL   F
Sbjct:  305 DPSIFTVLTAPSETPGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFVPGGASLHNMMLPHGPDREAFDH--ASNGELKPTKLTGTMAFMFETRYPQRVTEYAATSGLLQPDYADCWTGLEKRF 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEU2 (Homogentisate 1,2-dioxygenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=hmgA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = -1
Query:  275 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYE 706
            DPSI TVLT+P    G A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GF+PGGASLH+CM+ HGPD  T E  IA  +E  P++I +TMAFMFE+  + R    AL+ P +  DY  CW  +   F+ E
Sbjct:  291 DPSIFTVLTSPGAIHGQANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIDGAYDAKAEGFMPGGASLHNCMSAHGPDNVTAEKAIA--AELKPHRIDNTMAFMFETGKVLRPSRHALDCPQLQTDYDACWKDMARTFTQE 432          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSESM (Homogentisate 1,2-dioxygenase OS=Pseudomonas syringae pv. tomato GN=hmgA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 82/146 (56.16%), Postives = 105/146 (71.92%), Query Frame = -1
Query:  269 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEA 706
            DPSI TVLT+P    G A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GF+PGG+SLH+CM+ HGPD  T E  IA  ++  P+KI +TMAFMFE+  + R    AL  P +  DY  CW G+   F+ E +
Sbjct:  291 DPSIFTVLTSPGAVHGQANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIDGAYDAKAEGFMPGGSSLHNCMSAHGPDNITAEKAIA--ADLKPHKIENTMAFMFETGKVLRPSLHALACPQLQADYDACWNGMARTFNKESS 434          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSE14 (Homogentisate 1,2-dioxygenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=hmgA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = -1
Query:  275 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYE 706
            DPSI TVLT+P    G A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GF+PGGASLH+CM+ HGPD  T E  IA  +E  P+KI +TMAFMFE+  + R    AL  P +  DY  CW  +   F+ E
Sbjct:  291 DPSIFTVLTSPGAAHGQANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIDGAYDAKAEGFMPGGASLHNCMSAHGPDNVTAEKAIA--AELKPHKIENTMAFMFETGKVLRPSRHALGCPQLQADYDACWNDMTRTFNKE 432          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_SINMW (Homogentisate 1,2-dioxygenase OS=Sinorhizobium medicae (strain WSM419) GN=hmgA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40
Identity = 81/141 (57.45%), Postives = 97/141 (68.79%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLTAP+ + G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M  HGPD   +E   A   E  P K+ +TMAFMFE+    ++  +A E   +  DY  CW GL   F
Sbjct:  308 DPSIFTVLTAPSGEEGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGRYDAKEEGFVPGGMSLHNMMLAHGPDFSGFEK--ASNGELKPVKLDNTMAFMFETRFPQQLTTFAAELETLQDDYIDCWSGLERKF 446          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHOPT (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain TIE-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40
Identity = 79/141 (56.03%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P++ PG A +DFVIFP RW+VA++TFRPP+YH N MSEFMGLI G Y+AK  GF+PGGASLH+ M PHGPD + ++   A   E  P K+T TMAFMFE+    R+  +A  S  +  DY  CW GL   F
Sbjct:  305 DPSIFTVLTSPSETPGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFVPGGASLHNMMLPHGPDREAFDH--ASNGELKPVKLTGTMAFMFETRYPQRVTEYAASSGLLQDDYADCWNGLEKRF 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHOPA (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris GN=hmgA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40
Identity = 79/141 (56.03%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P++ PG A +DFVIFP RW+VA++TFRPP+YH N MSEFMGLI G Y+AK  GF+PGGASLH+ M PHGPD + ++   A   E  P K+T TMAFMFE+    R+  +A  S  +  DY  CW GL   F
Sbjct:  305 DPSIFTVLTSPSETPGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFVPGGASLHNMMLPHGPDREAFDH--ASNGELKPVKLTGTMAFMFETRYPQRVTEYAASSGLLQDDYADCWNGLEKRF 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHIME (Homogentisate 1,2-dioxygenase OS=Rhizobium meliloti GN=hmgA PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 81/141 (57.45%), Postives = 97/141 (68.79%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLTAP+ + G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M  HGPD   +E   A   E  P K+ +TMAFMFE+    ++  +A E   +  DY  CW GL   F
Sbjct:  308 DPSIFTVLTAPSGEEGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIYGRYDAKEEGFVPGGMSLHNMMLAHGPDFSGFEK--ASNGELKPVKLDNTMAFMFETRFPQQLTTFAAELDTLQDDYMDCWSGLERKF 446          
The following BLAST results are available for this feature:
BLAST of CN189603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_RHIL37.963e-4156.74Homogentisate 1,2-dioxygenase OS=Rhizobium legumin... [more]
HGD_CAEEL7.963e-4158.74Homogentisate 1,2-dioxygenase OS=Caenorhabditis el... [more]
HGD_RHOP51.358e-4056.74Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_PSEU21.358e-4056.94Homogentisate 1,2-dioxygenase OS=Pseudomonas syrin... [more]
HGD_PSESM1.358e-4056.16Homogentisate 1,2-dioxygenase OS=Pseudomonas syrin... [more]
HGD_PSE141.358e-4057.64Homogentisate 1,2-dioxygenase OS=Pseudomonas syrin... [more]
HGD_SINMW2.317e-4057.45Homogentisate 1,2-dioxygenase OS=Sinorhizobium med... [more]
HGD_RHOPT2.317e-4056.03Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOPA2.317e-4056.03Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHIME3.952e-4057.45Homogentisate 1,2-dioxygenase OS=Rhizobium melilot... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189603 ID=CN189603; Name=CN189603; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTAAATTTTTTTACATCAATTATATATGTACATCCAA
GTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATAT
ATAACCCAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTG
TTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCATGCCTGGGGA
CCAAATCAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTC
CCCATCGCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATC
CAATCCAGCACCGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCC
CAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGT
ATCAGTGATCTTGTATGGCCCAGCCTCGCTTCCACGTGCAATGGTGGCCT
CATATGTCTTCGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTC
GCACCACCTGGGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTAT
CAGACCCATAAACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGA
ATGTATGCTCTGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGC
AATGCCACACCAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGA
TGGATC
back to top