CN189603

Overview
NameCN189603
Unique NameCN189603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_NITHX (Homogentisate 1,2-dioxygenase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hmgA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 78/141 (55.32%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P++  G A +DFVIFP RW+VAE+TFRPP+YH N MSEFMGLI G Y+AK  GF+PGG SLH+CM PHGPD + ++   A  +E  P K+T T+AFMFE+    R+  +A  S  +  DY  CW GL   F
Sbjct:  305 DPSIFTVLTSPSEIAGTANIDFVIFPERWVVAENTFRPPWYHMNVMSEFMGLIYGVYDAKPQGFVPGGISLHNCMLPHGPDREAFDH--ASNTELKPVKLTGTLAFMFETRFPQRVTEYAATSDALQDDYADCWQGLERRF 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_LEGPH (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hmgA PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 78/142 (54.93%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+ ++ PGV+ LDFVIFPPRW+VAEHTFRPPY+HRN M+E MGL+ G Y+AK +GF+PGG S+H+CMTPHGPD ++YE  IA   +  P  I +++AFMFE+    ++   A   P    DY  CW G +  FS
Sbjct:  277 DPSIFTVLTSESEIPGVSNLDFVIFPPRWMVAEHTFRPPYFHRNYMNELMGLVYGEYDAKKEGFIPGGISIHNCMTPHGPDYESYE--IAASQDLKPNYI-NSLAFMFETKDYWQVTEQAYRHPSRQMDYLNCWQGFKIEFS 415          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_LEGPA (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Paris) GN=hmgA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 78/142 (54.93%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+ ++ PGV+ LDFVIFPPRW+VAEHTFRPPY+HRN M+E MGL+ G Y+AK +GF+PGG S+H+CMTPHGPD ++YE  IA   +  P  I +++AFMFE+    ++   A   P    DY  CW G +  FS
Sbjct:  277 DPSIFTVLTSESEIPGVSNLDFVIFPPRWMVAEHTFRPPYFHRNYMNELMGLVYGEYDAKKEGFIPGGISIHNCMTPHGPDYESYE--IAASQDLKPNYI-NSLAFMFETKDYWQVTEQAYRHPSRQMDYLNCWQGFKIEFS 415          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_LEGPL (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Lens) GN=hmgA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 78/142 (54.93%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+ ++ PGV+ LDFVIFPPRW+VAEHTFRPPY+HRN M+E MGL+ G Y+AK +GF+PGG S+H+CMTPHGPD ++YE  IA   +  P  I +++AFMFE+    ++   A   P    DY  CW G +  FS
Sbjct:  277 DPSIFTVLTSESEIPGVSNLDFVIFPPRWMVAEHTFRPPYFHRNYMNELMGLVYGEYDAKKEGFIPGGISIHNCMTPHGPDYESYE--IAASQDLKPNYI-NSLAFMFETKDYWQVTEQAYRHPSRQIDYLNCWQGFKIEFS 415          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_LEGPC (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Corby) GN=hmgA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 78/142 (54.93%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+ ++ PGV+ LDFVIFPPRW+VAEHTFRPPY+HRN M+E MGL+ G Y+AK +GF+PGG S+H+CMTPHGPD ++YE  IA   +  P  I +++AFMFE+    ++   A   P    DY  CW G +  FS
Sbjct:  277 DPSIFTVLTSESEIPGVSNLDFVIFPPRWMVAEHTFRPPYFHRNYMNELMGLVYGEYDAKKEGFIPGGISIHNCMTPHGPDYESYE--IAASQDLKPNYI-NSLAFMFETKDYWQVTEQAYRHPSRQVDYLNCWQGFKVEFS 415          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_BRAJA (Homogentisate 1,2-dioxygenase OS=Bradyrhizobium japonicum GN=hmgA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 78/141 (55.32%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P++  G A +DFVIFP RW+VA++TFRPP+YH N MSEFMGLI G Y+AK  GF+PGG SLH+CM PHGPD   +E   A   E  P K+T TMAFMFE+    R+   A  +  +  DY  CW GL   F
Sbjct:  305 DPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFVPGGMSLHNCMLPHGPDRDAFEH--ASNGELKPVKLTGTMAFMFETRYPQRVTAHAANASTLQDDYADCWKGLEKRF 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHOP2 (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain HaA2) GN=hmgA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P++  G A +DFVIFP RW+VAE+TFRPP+YH N MSEFMGLI G Y+AK  GF+PGGASLH+ M PHGPD + ++   A   E  P K+T TMAFMFE+    R+  +A  +  +  DY  CW GL   F
Sbjct:  305 DPSIFTVLTSPSETAGTANIDFVIFPERWMVAENTFRPPWYHMNIMSEFMGLICGVYDAKPQGFVPGGASLHNMMLPHGPDREAFDH--ASNGELKPVKLTGTMAFMFETRYPQRVTEYAATAGTLQDDYADCWRGLEKRF 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHOPB (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisB18) GN=hmgA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.271e-38
Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P++  G A +DFVIFP RW+VAE+TFRPP+YH N MSEFMGLI G Y+AK  GFLPGGASLH+ M PHGPD + ++   A  +E  P K+  T+AFMFE+    R+   A  S  +  DY  CW GL+  F
Sbjct:  305 DPSIFTVLTSPSETAGTANIDFVIFPERWMVAENTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFLPGGASLHNMMLPHGPDREAFDH--ASNAELKPVKLEGTLAFMFETRYPQRVTVHAATSSTLQADYAECWRGLQKRF 443          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_STRCO (Homogentisate 1,2-dioxygenase OS=Streptomyces coelicolor GN=hmgA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.660e-38
Identity = 76/141 (53.90%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P+D PG+A +DFV+F PRWLV E TFRPPY+HRN MSE+MGLI G Y+AKA+GF+PGG SLH+ M+ HGPD +T++   A  +E  P +I D +AFMFE+     + P A  +  +   Y   W GL  HF
Sbjct:  299 DPSIFTVLTSPSDTPGLAGVDFVVFAPRWLVGEDTFRPPYFHRNVMSEYMGLIEGAYDAKAEGFVPGGGSLHNMMSAHGPDRETFDR--ASAAELKPQRIDDGLAFMFETRWPVTLTPQAARAEHLQPGYDDVWQGLERHF 437          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHOPS (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisB5) GN=hmgA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 77/141 (54.61%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P++  G A +DFVIFP RW+VAE+TFRPP+YH N MSEFMGLI G Y+AK  GF PGGASLH+ M PHGPD + ++   A   E  P K+T TMAFM E+    R+  +A  +  +  DY  CW GL   F
Sbjct:  305 DPSIFTVLTSPSETAGTANIDFVIFPERWMVAENTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFAPGGASLHNMMLPHGPDREAFDH--ASNGELKPVKLTGTMAFMLETRYPQRVTEYAATADTLQDDYADCWRGLEKRF 443          
The following BLAST results are available for this feature:
BLAST of CN189603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_NITHX1.502e-3955.32Homogentisate 1,2-dioxygenase OS=Nitrobacter hambu... [more]
HGD_LEGPH2.562e-3954.93Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPA2.562e-3954.93Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPL3.346e-3954.93Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPC3.346e-3954.93Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_BRAJA3.346e-3955.32Homogentisate 1,2-dioxygenase OS=Bradyrhizobium ja... [more]
HGD_RHOP25.707e-3955.32Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOPB1.271e-3855.32Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_STRCO1.660e-3853.90Homogentisate 1,2-dioxygenase OS=Streptomyces coel... [more]
HGD_RHOPS2.832e-3854.61Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189603 ID=CN189603; Name=CN189603; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTAAATTTTTTTACATCAATTATATATGTACATCCAA
GTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATAT
ATAACCCAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTG
TTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCATGCCTGGGGA
CCAAATCAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTC
CCCATCGCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATC
CAATCCAGCACCGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCC
CAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGT
ATCAGTGATCTTGTATGGCCCAGCCTCGCTTCCACGTGCAATGGTGGCCT
CATATGTCTTCGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTC
GCACCACCTGGGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTAT
CAGACCCATAAACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGA
ATGTATGCTCTGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGC
AATGCCACACCAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGA
TGGATC
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