CN189603

Overview
NameCN189603
Unique NameCN189603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_RHILO (Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN=hmgA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.398e-37
Identity = 76/142 (53.52%), Postives = 95/142 (66.90%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLTAP+ + G A +DFVIFPPRWLVAE TFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M  HGPD   +E   A  ++  P K+ +TMAFMFE+     +  +  E      +Y  CW  L+  F+
Sbjct:  310 DPSIFTVLTAPSGEEGTANIDFVIFPPRWLVAEDTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGISLHNLMLAHGPDAPGFEK--ASRADLKPVKLDNTMAFMFETRFPQMLTRYGAELETRQDNYIDCWADLKKRFN 449          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_STRAW (Homogentisate 1,2-dioxygenase OS=Streptomyces avermitilis GN=hmgA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 76/141 (53.90%), Postives = 96/141 (68.09%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 706
            DPSI TVLT+P+D PG+A +DFV+F PRWLV E TFRPPY+HRN MSE+MGLI G Y+AKA GF+PGG SLH+ M+ HGPD +T++   A  +E  P KI D +AFMFE+         A  +  +   Y   W GL+ HF
Sbjct:  296 DPSIFTVLTSPSDTPGLAGVDFVVFAPRWLVGEDTFRPPYFHRNVMSEYMGLIEGAYDAKAAGFVPGGGSLHNMMSAHGPDRETFDR--ASAAELRPQKIDDGLAFMFETRWPVTATAQAARAEHLQPAYDDVWQGLQRHF 434          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_EMENI (Homogentisate 1,2-dioxygenase OS=Emericella nidulans GN=hmgA PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.718e-35
Identity = 80/145 (55.17%), Postives = 96/145 (66.21%), Query Frame = -1
Query:  284 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAK-ADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALESPFMDHDYY--RCWIGLRSHF 706
            DPSI TVLT P+D  G A+ DFVIFPPRWLVAE TFRPP+YHRN MSEFMGLI G Y+AK   GF P GASLH+ M+ HGPD   +E   A  ++  P KI D +MAFMFES L+  +  W L++     + Y    W  L+ HF
Sbjct:  299 DPSIYTVLTGPSDHVGTAIADFVIFPPRWLVAEKTFRPPWYHRNTMSEFMGLITGNYDAKTGGGFQPAGASLHNIMSAHGPDMHAFEG--ASNADLKPTKIGDGSMAFMFESSLMVGVSEWGLKTCQKVQEEYNEHSWQPLKRHF 441          
The following BLAST results are available for this feature:
BLAST of CN189603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_RHILO2.398e-3753.52Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN... [more]
HGD_STRAW4.090e-3753.90Homogentisate 1,2-dioxygenase OS=Streptomyces aver... [more]
HGD_EMENI1.718e-3555.17Homogentisate 1,2-dioxygenase OS=Emericella nidula... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189603 ID=CN189603; Name=CN189603; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTAAATTTTTTTACATCAATTATATATGTACATCCAA
GTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATAT
ATAACCCAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTG
TTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCATGCCTGGGGA
CCAAATCAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTC
CCCATCGCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATC
CAATCCAGCACCGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCC
CAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGT
ATCAGTGATCTTGTATGGCCCAGCCTCGCTTCCACGTGCAATGGTGGCCT
CATATGTCTTCGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTC
GCACCACCTGGGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTAT
CAGACCCATAAACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGA
ATGTATGCTCTGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGC
AATGCCACACCAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGA
TGGATC
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