CN189602

Overview
NameCN189602
Unique NameCN189602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 35/103 (33.98%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  378 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKNVEKKD 683
            ++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  526 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 628          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 35/103 (33.98%), Postives = 62/103 (60.19%), Query Frame = -2
Query:  378 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKNVEKKD 683
            ++I+ H   I  GY  VL  HT    V+ + L+  +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  397 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 499          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 35/103 (33.98%), Postives = 62/103 (60.19%), Query Frame = -2
Query:  378 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKNVEKKD 683
            ++I+ H   I  GY  VL  HT    V+ + L+  +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  397 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 499          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  399 IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 656
            + NG++ V+  HT+   VKF EL  K+++ + ++ +K P F K G   +  +  ++P+  ET+ DYP LGRF +RD   T+A+G I
Sbjct:  623 LSNGFSCVMHLHTAIEEVKFVELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVSEPVCAETYKDYPQLGRFTLRDQGTTIAIGKI 708          
The following BLAST results are available for this feature:
BLAST of CN189602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
ERF3B_HUMAN2.494e-1233.98Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE4.255e-1233.98Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN4.255e-1233.98Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANMA8.024e-1137.21Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189602 ID=CN189602; Name=CN189602; organism=Citrus sinensis; type=EST; length=684bp
GACGGAAAAATGAAAAGTAGATATCAATTCCGCAGAAACAACACAATGAC
AAAACTTCTGAGCCGATTCAGATGAAACCGAACCACCTCAAGTATCAATA
CAAACAAAGACCATAACTATTAATAATATTGAGACTCCAGGTTAGAGCTG
CGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTACCCGACACCAA
AGGCAACAAACTAAAACCTACAAAGGAAAGCAAGCATCGAACTATAACAG
TACCAAAAATAACCAAGTTTGTATAACTACAATTATTAAAATAGACTCCA
TCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTCTTCTTGGCTGC
AGACTTGGTGACCTTGGCACCTGATGGATCCTTCTTTTCAACATTCTTAA
TCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCA
AGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAAT
CATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCT
CAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAAC
TTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATT
TCCAATCTGGCCAGGGTGGTTCATGATGATGACC
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