CN189602

Overview
NameCN189602
Unique NameCN189602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:1072..1755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.730e-42
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = -2
Query:  381 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 683
            VII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VETFSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  344 VIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 8.790e-42
Identity = 77/105 (73.33%), Postives = 93/105 (88.57%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI++NHPGQIG GYAPVLDCHT+HIA KF  L+ KIDRR+GK++E  PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VEK D +G
Sbjct:  343 VIVLNHPGQIGAGYAPVLDCHTAHIACKFDTLIEKIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 447          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.790e-42
Identity = 81/105 (77.14%), Postives = 93/105 (88.57%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VII+NHPGQI  GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVVE FS+YPPLGRFAVRDMRQTVAVGVIK V+ K+ SG
Sbjct:  344 VIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.790e-42
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D +G
Sbjct:  342 VIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.790e-42
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D +G
Sbjct:  342 VIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.790e-42
Identity = 83/101 (82.18%), Postives = 90/101 (89.11%), Query Frame = -2
Query:  381 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 683
            VII+NHPGQIG GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK VEKK
Sbjct:  344 VIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.499e-41
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = -2
Query:  372 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPS 683
            VII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK  S
Sbjct:  344 VIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKKAAS 447          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.958e-41
Identity = 77/102 (75.49%), Postives = 91/102 (89.22%), Query Frame = -2
Query:  378 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 683
            VI++NHPGQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V K D
Sbjct:  343 VIVLNHPGQVGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSD 444          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.340e-41
Identity = 76/105 (72.38%), Postives = 95/105 (90.48%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRR+GK LE  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVG+IK+V+K D SG
Sbjct:  342 VIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.340e-41
Identity = 79/104 (75.96%), Postives = 93/104 (89.42%), Query Frame = -2
Query:  372 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPS 683
            VIIMNHPGQI NGY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRFAVRDMRQTVAVGVIK+VEK D S
Sbjct:  344 VIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGS 447          
The following BLAST results are available for this feature:
BLAST of CN189602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
EF1A3_XENLA6.730e-4281.19Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_YARLI8.790e-4273.33Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_ORYLA8.790e-4277.14Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A2_RHIRA8.790e-4275.24Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA8.790e-4275.24Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A0_XENLA8.790e-4282.18Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A2_XENLA1.499e-4178.85Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_AJECG1.958e-4175.49Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_SCHCO3.340e-4172.38Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_CAEEL3.340e-4175.96Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189602 ID=CN189602; Name=CN189602; organism=Citrus sinensis; type=EST; length=684bp
GACGGAAAAATGAAAAGTAGATATCAATTCCGCAGAAACAACACAATGAC
AAAACTTCTGAGCCGATTCAGATGAAACCGAACCACCTCAAGTATCAATA
CAAACAAAGACCATAACTATTAATAATATTGAGACTCCAGGTTAGAGCTG
CGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTACCCGACACCAA
AGGCAACAAACTAAAACCTACAAAGGAAAGCAAGCATCGAACTATAACAG
TACCAAAAATAACCAAGTTTGTATAACTACAATTATTAAAATAGACTCCA
TCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTCTTCTTGGCTGC
AGACTTGGTGACCTTGGCACCTGATGGATCCTTCTTTTCAACATTCTTAA
TCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCA
AGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAAT
CATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCT
CAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAAC
TTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATT
TCCAATCTGGCCAGGGTGGTTCATGATGATGACC
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