CN189602

Overview
NameCN189602
Unique NameCN189602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.299e-40
Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = -2
Query:  381 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 683
            VII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  344 VIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = -2
Query:  372 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPS 683
            VI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D S
Sbjct:  344 VIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGS 447          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 74/105 (70.48%), Postives = 90/105 (85.71%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI++NHPGQI  GYAPVLDCHT+HIA KF E+ +K+DRRSGK LE+EPKF+K+G+A +V+M+P KPM VE F+ YPPLGRFAVRDM+QTVAVGVIK V KK+  G
Sbjct:  332 VIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKEQKG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = -2
Query:  381 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 683
            VII+NHPGQI  GYAPVLDCH +HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  344 VIILNHPGQISAGYAPVLDCHMAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 73/104 (70.19%), Postives = 89/104 (85.58%), Query Frame = -2
Query:  372 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPS 683
            VI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E EPKF+K+GDA M+ ++P+KP+ VE FSD+PPLGRFAVRDMRQTVAVGVIK+V  KDP+
Sbjct:  344 VIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDPT 447          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 77/105 (73.33%), Postives = 89/105 (84.76%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI+MNHPGQI  GY PVLDCHT+HIA KF+EL  K+DRR+GK  E  PKFLK+GDAG+V++IPTKP  VE+F+DY PLGRFAVRDMRQTVAVGVIK+V K D SG
Sbjct:  345 VIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDDGSG 449          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = -2
Query:  381 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 683
            VII+NHPGQI  GYAPV DCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  344 VIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.833e-39
Identity = 76/103 (73.79%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  375 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 683
            VII+NHPGQI  GY+PVLDCHT+HIA KF+EL+ KIDRRSGK++E+ PKF+K+GDA + KM+P+KPM VE F+DY PLGRFAVRDMRQTVAVGVIK VEK  P
Sbjct:  342 VIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.833e-39
Identity = 76/103 (73.79%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  375 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 683
            VII+NHPGQI  GY+PVLDCHT+HIA KF+EL+ KIDRRSGK++E+ PKF+K+GDA + KM+P+KPM VE F+DY PLGRFAVRDMRQTVAVGVIK VEK  P
Sbjct:  342 VIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 73/105 (69.52%), Postives = 91/105 (86.67%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI++NHPGQIG GY PVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VK++  KP+ VET++DYPPLGRFAVRDMRQTVAVGVIK+V+K +  G
Sbjct:  342 VIVLNHPGQIGAGYTPVLDCHTAHIACKFAELIEKIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          
The following BLAST results are available for this feature:
BLAST of CN189602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
EF1A2_BOVIN6.299e-4077.23Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A4_OSCTI8.227e-4074.04Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A_STYLE1.074e-3970.48Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A3_HUMAN1.074e-3978.22Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A_ARTSA1.403e-3970.19Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A3_OSCTI1.403e-3973.33Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A1_HORSE1.403e-3978.22Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A2_SCHPO1.833e-3973.79Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO1.833e-3973.79Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_CRYNE2.394e-3969.52Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189602 ID=CN189602; Name=CN189602; organism=Citrus sinensis; type=EST; length=684bp
GACGGAAAAATGAAAAGTAGATATCAATTCCGCAGAAACAACACAATGAC
AAAACTTCTGAGCCGATTCAGATGAAACCGAACCACCTCAAGTATCAATA
CAAACAAAGACCATAACTATTAATAATATTGAGACTCCAGGTTAGAGCTG
CGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTACCCGACACCAA
AGGCAACAAACTAAAACCTACAAAGGAAAGCAAGCATCGAACTATAACAG
TACCAAAAATAACCAAGTTTGTATAACTACAATTATTAAAATAGACTCCA
TCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTCTTCTTGGCTGC
AGACTTGGTGACCTTGGCACCTGATGGATCCTTCTTTTCAACATTCTTAA
TCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCA
AGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAAT
CATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCT
CAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAAC
TTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATT
TCCAATCTGGCCAGGGTGGTTCATGATGATGACC
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