CN189602

Overview
NameCN189602
Unique NameCN189602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 78/105 (74.29%), Postives = 91/105 (86.67%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRS K +E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D +G
Sbjct:  342 VIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 445          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.083e-39
Identity = 74/102 (72.55%), Postives = 89/102 (87.25%), Query Frame = -2
Query:  378 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 683
            VI++NHPGQI  GY+PVLDCHT+HIA +F EL+ K DRRSGK+LE  PKFLK+GDA +VK +P+KPM VE FS+YPPLGRFAVRDMRQTVAVGVIK+V+K +
Sbjct:  342 VIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38
Identity = 72/105 (68.57%), Postives = 88/105 (83.81%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E+ PKF+K+GDA +V ++P+KP+ VE F ++PPLGRFAVRDMRQTVAVGVIK V  KD SG
Sbjct:  344 VIVLNHPGQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASG 448          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 77/105 (73.33%), Postives = 89/105 (84.76%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VII+NHPGQIGNGYAPVLDCHT HIA KF+ + TKIDRRSGKELE EPKF+K+GDA +V M P KPM VE+F+DYPPLG  +  DMRQTVAVGVIK+V KK+ +G
Sbjct:  332 VIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.313e-37
Identity = 71/105 (67.62%), Postives = 89/105 (84.76%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI+++HPGQI  GY+PV+DCHT+HIA KF+ L  ++DRRSGK LE +PKF+K GDA ++KM P+KPM VE+F +YPPLGRFAVRDM+QTVAVGVIK VEKK+  G
Sbjct:  229 VIVLHHPGQINPGYSPVVDCHTAHIACKFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  378 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 683
            VIIMNHPGQI  GY PVLDCHT+HIA KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  333 VIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.514e-37
Identity = 72/100 (72.00%), Postives = 86/100 (86.00%), Query Frame = -2
Query:  384 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 683
            VII+NHPG+I  GY PVLDCHT+HIA KF+EL+ KIDRRSGK +E EPK +K+GDA ++ +IP+K M VE+FS YPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  346 VIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 71/105 (67.62%), Postives = 85/105 (80.95%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E+ PK +K+GDA +V + PTKPM VE F ++PPLGRFAVRDMRQTVAVGVIK+V  KD  G
Sbjct:  344 VIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDTQG 448          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.897e-36
Identity = 70/105 (66.67%), Postives = 87/105 (82.86%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  KD +G
Sbjct:  293 VIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 68/105 (64.76%), Postives = 86/105 (81.90%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK V  K+  G
Sbjct:  344 VIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGG 448          
The following BLAST results are available for this feature:
BLAST of CN189602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
EF1A3_RHIRA2.394e-3974.29Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_YEAST4.083e-3972.55Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A1_DROME1.188e-3868.57Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_EUGGR5.896e-3873.33Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_EIMBO1.313e-3767.62Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_TETPY1.715e-3771.57Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_HYDAT8.514e-3772.00Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_APIME1.112e-3667.62Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_RHYAM1.897e-3666.67Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_BOMMO2.477e-3664.76Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189602 ID=CN189602; Name=CN189602; organism=Citrus sinensis; type=EST; length=684bp
GACGGAAAAATGAAAAGTAGATATCAATTCCGCAGAAACAACACAATGAC
AAAACTTCTGAGCCGATTCAGATGAAACCGAACCACCTCAAGTATCAATA
CAAACAAAGACCATAACTATTAATAATATTGAGACTCCAGGTTAGAGCTG
CGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTACCCGACACCAA
AGGCAACAAACTAAAACCTACAAAGGAAAGCAAGCATCGAACTATAACAG
TACCAAAAATAACCAAGTTTGTATAACTACAATTATTAAAATAGACTCCA
TCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTCTTCTTGGCTGC
AGACTTGGTGACCTTGGCACCTGATGGATCCTTCTTTTCAACATTCTTAA
TCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCA
AGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAAT
CATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCT
CAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAAC
TTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATT
TCCAATCTGGCCAGGGTGGTTCATGATGATGACC
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