CN189598

Overview
NameCN189598
Unique NameCN189598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_BOVIN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.800e-63
Identity = 113/173 (65.32%), Postives = 134/173 (77.46%), Query Frame = 2
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ MYN D+SI  FA +S   A  K WPLYL
Sbjct:   37 LDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPSDGSPKTVYLVHNFTESGGVAMGMYNQDKSIEDFAHSSFQMALSKNWPLYL 209          
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHP_SCHPO (Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe GN=idp1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 5.237e-63
Identity = 118/176 (67.05%), Postives = 140/176 (79.55%), Query Frame = 2
Query:    5 LDIK--YFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK-DEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            +DIK  Y+DLG+  RD T+D++TV++A+A LK +V IKCATITPDEARVKE+ LK+MWKSPNGTIRNILNGTVFREPI+ KN+P+ IPGWT PICIGRHAFGDQY++TD V  GPGKL+L F P+G    K    VY F G  GVA+SMYNTD+SIR FA +S   A QKK PLYL
Sbjct:   45 MDIKLDYYDLGIEARDKTNDQITVDAAKAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNG-SGVAMSMYNTDDSIRGFAHSSFQMALQKKMPLYL 219          
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.990e-62
Identity = 111/173 (64.16%), Postives = 133/173 (76.88%), Query Frame = 2
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LD+  +DL + NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ M+N D+SI  FA +S   A  K WPLYL
Sbjct:   37 LDLHSYDLSIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEICYTPSDGSPKTVYLVHNFTESGGVAMGMFNQDKSIEDFAHSSFQMALSKNWPLYL 209          
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_PONAB (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 2.599e-62
Identity = 111/173 (64.16%), Postives = 133/173 (76.88%), Query Frame = 2
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ MYN D+SI  FA +S   A  K WPLYL
Sbjct:   37 LDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 209          
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.599e-62
Identity = 111/173 (64.16%), Postives = 134/173 (77.46%), Query Frame = 2
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ F P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLYL
Sbjct:   37 LDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITFTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 209          
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.790e-62
Identity = 110/173 (63.58%), Postives = 134/173 (77.46%), Query Frame = 2
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLYL
Sbjct:   37 LDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 209          
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.790e-62
Identity = 110/173 (63.58%), Postives = 134/173 (77.46%), Query Frame = 2
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLYL
Sbjct:   37 LDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 209          
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.790e-62
Identity = 110/173 (63.58%), Postives = 134/173 (77.46%), Query Frame = 2
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLYL
Sbjct:   37 LDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 209          
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHP_ASPNG (Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 7.562e-62
Identity = 117/173 (67.63%), Postives = 137/173 (79.19%), Query Frame = 2
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            +D+KY+DLGL  RD TDD+VTVE+AEA  KY V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GTVFREPII   +PRL+PGW KPI IGRHAFGDQYRATD VI GPGKL+LV+ P   + +T ++VY+F G GG+A + YNTDESIR FA AS   A  K  PLY+
Sbjct:  126 VDLKYYDLGLEYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEFKLKKMWLSPNGTIRNILGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLELVYTPVNGEPET-VKVYDFQG-GGIAQTQYNTDESIRGFAHASFQMALLKGLPLYM 296          
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 9.876e-62
Identity = 110/173 (63.58%), Postives = 133/173 (76.88%), Query Frame = 2
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LD+  +DLG+ NRDAT+D+VT ++AEA  K+NV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ MYN D+SI  FA +S   A  K WPLYL
Sbjct:   37 LDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 209          
The following BLAST results are available for this feature:
BLAST of CN189598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_BOVIN1.800e-6365.32Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos... [more]
IDHP_SCHPO5.237e-6367.05Probable isocitrate dehydrogenase [NADP], mitochon... [more]
IDHC_SHEEP1.990e-6264.16Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHC_PONAB2.599e-6264.16Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pon... [more]
IDHC_MICME2.599e-6264.16Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_RAT5.790e-6263.58Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE5.790e-6263.58Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_MICOH5.790e-6263.58Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHP_ASPNG7.562e-6267.63Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_HUMAN9.876e-6263.58Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189598 ID=CN189598; Name=CN189598; organism=Citrus sinensis; type=EST; length=524bp
AGGGTTGGACATAAAGTACTTCGACCTTGGCCTTCCGAATCGTGATGCAA
CTGATGACAAAGTTACCGTTGAAAGTGCAGAAGCCACTCTCAAGTACAAT
GTAGCGATCAAGTGTGCTACTATTACTCCAGATGAAGCTCGTGTTAAGGA
ATTTGTCTTGAAACAGATGTGGAAGAGTCCAAATGGGACAATCAGGAATA
TTTTGAATGGCACTGTTTTCAGAGAACCAATCATTTGCAAAAATGTCCCT
CGGCTTATTCCAGGCTGGACAAAGCCCATATGCATTGGCAGGCATGCTTT
TGGTGATCAATATCGAGCAACTGATACAGTTATTCAAGGACCTGGCAAAC
TTAAATTGGTGTTTGTACCAGAGGGAAAAGATGAGAAGACAGAGTTAGAG
GTTTACAACTTTACGGGTGAGGGTGGAGTTGCATTGTCCATGTATAACAC
TGATGAGTCCATCCGAGCTTTTGCTGAGGCTTCTATGAACACTGCCTATC
AGAAGAAGTGGCCACTCTATCTTA
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