CN189597

Overview
NameCN189597
Unique NameCN189597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:23..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 91/133 (68.42%), Postives = 101/133 (75.94%), Query Frame = -2
Query:  282 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTR--EHYLNTEEFIDAVANDLRARLFGK 674
            LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVE G MTKDLA  IHG    +  EH+LNT +F+D + ++L  R  GK
Sbjct:  320 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL-DRALGK 451          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 88/126 (69.84%), Postives = 98/126 (77.78%), Query Frame = -2
Query:  303 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTR--EHYLNTEEFIDAVANDL 674
            LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVE G MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  320 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 445          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.684e-43
Identity = 88/126 (69.84%), Postives = 98/126 (77.78%), Query Frame = -2
Query:  303 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTR--EHYLNTEEFIDAVANDL 674
            LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVE G MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  320 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.684e-43
Identity = 88/126 (69.84%), Postives = 98/126 (77.78%), Query Frame = -2
Query:  303 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTR--EHYLNTEEFIDAVANDL 674
            LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVE G MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  320 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQMLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.332e-42
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGF-KMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F + LE  C+ T+E G MTKDLA  I G   + R  YLNT EF+D +  +L+ +L
Sbjct:  281 VAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_BOVIN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.612e-42
Identity = 85/129 (65.89%), Postives = 101/129 (78.29%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGF-KMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ET TN IASIFAW+RGLAHRAKLDNN  L  F + LE  C+ T+E G MTKDLA  I G   + R  YLNT EF+D +  +L+ +L
Sbjct:  281 VAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETLTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_PONAB (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.128e-41
Identity = 86/129 (66.67%), Postives = 100/129 (77.52%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGF-KMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F   LE   V T+E G MTKDLA  I G   + R  YLNT EF+D +  +L+ +L
Sbjct:  281 VAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSVETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGF-KMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F   LE   + T+E G MTKDLA  I G   + R  YLNT EF+D +  +L+ +L
Sbjct:  281 VAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.991e-38
Identity = 79/128 (61.72%), Postives = 98/128 (76.56%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLGLMTSVL+  DGKT+EAEAAHGTVTRHYR +Q G  TSTN IASIFAW+RGL HR KLD    ++DF  KLE+  + TVE GKMTKDLA++I       + +LN+EEF+DA+A++L   L
Sbjct:  284 VAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKEL 407          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.991e-38
Identity = 79/128 (61.72%), Postives = 98/128 (76.56%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLGLMTSVL+  DGKT+EAEAAHGTVTRHYR +Q G  TSTN IASIFAW+RGL HR KLD    ++DF  KLE+  + TVE GKMTKDLA++I       + +LN+EEF+DA+A++L   L
Sbjct:  284 VAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKEL 407          
The following BLAST results are available for this feature:
BLAST of CN189597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_MOUSE2.055e-4368.42Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN2.055e-4369.84Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MACFA2.684e-4369.84Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_HUMAN2.684e-4369.84Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_SHEEP1.332e-4266.67Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHC_BOVIN6.612e-4265.89Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos... [more]
IDHC_PONAB1.128e-4166.67Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pon... [more]
IDHC_HUMAN1.473e-4165.89Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
IDH_MYCTU1.991e-3861.72Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO1.991e-3861.72Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002B23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189597 ID=CN189597; Name=CN189597; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTAAAACCAGGGAACGTAAATTTNGGCAGCAATAG
TTTTTGTTTATAACAAGCCATGTTCAAAACATTTGCTTGCATGAAAATGA
AAGTTTGTCGATCAACAGGAAAGCAGTCTATTGTAGGAATTAAAAAAAAA
CCAAATCCCAATCCCCAATTTTCCCCTCTTCAATTATTTCTTCTCAGCAT
AATATGAAAAAAATAACCAAAGGAAGCTTCCCCAAGTCTTTACCTTTGAA
TGGGTAGCATCTGCAACAAAAAAAATCATGCTTTGCCAAAAAGTCTTGCT
CTTAAATCGTTGGCCACAGCATCAATGAACTCTTCAGTATTCAAATAGTG
TTCCCTAGTCATCTTAAATCCATGGATAATAAGTGCAAGATCCTTGGTCA
TCTTCCCAAATTCAACAGTGCCAACACATGCAGCTTCTAGTTTCTCAGTA
AAATCCAATAGCCTAGCATTGTTGTCCAACTTCGCCCTATGTGCAAGCCC
TCGTGACCAAGCAAAGATGGAGGCTATGCTGTTTGTGCTAGTTTCACCAC
CTTTCTGATGAACTCTGTAGTGTCGGGTGACTGTTCCATGGGCGGCTTCG
GCTTCAATTGTCTTCCCATCAGGGCATACCAGTACAGATGTCATCAATCC
AAGAGATCCAAACCCTTGAGCTAGGAAA
back to top