CN189597

Overview
NameCN189597
Unique NameCN189597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:23..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37
Identity = 83/126 (65.87%), Postives = 98/126 (77.78%), Query Frame = -2
Query:  300 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTV-EFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLR 674
            +AQGFGSLGLMTSVL+ PDGKT E+EAAHGTVTRH+R HQ+G ETSTNSIASIFAW+RG+  R KLDN   ++ F + LE+A V TV E G MTKDLALI+   K  R  Y+ TEEFIDAV + L+
Sbjct:  281 VAQGFGSLGLMTSVLITPDGKTFESEAAHGTVTRHFRQHQQGKETSTNSIASIFAWTRGIIQRGKLDNTPDVVKFGQILESATVNTVQEDGIMTKDLALILG--KSERSAYVTTEEFIDAVESRLK 404          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDH1_CANTR (Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.364e-37
Identity = 82/126 (65.08%), Postives = 95/126 (75.40%), Query Frame = -2
Query:  300 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGK-MTKDLALIIHGFKMTREHYLNTEEFIDAVANDLR 674
            +AQGFGSLGLMTS L+ PDGK  EAEAAHGTVTRHYR HQ+G ETSTNSIASIFAW+RGLA R KLD    ++DF  KLE A + TVE  + MTKDLAL +   K  R  Y+ T EF+DAVA+ L+
Sbjct:  306 VAQGFGSLGLMTSALMTPDGKAYEAEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLAQRGKLDETPDVVDFASKLEQATIDTVEVDRIMTKDLALAMG--KTDRSAYVTTTEFLDAVADRLK 429          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.434e-36
Identity = 81/130 (62.31%), Postives = 100/130 (76.92%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGF--KMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLGLMTSVL+  D  ++ AEA+HGTVTRH+R HQKG ETSTNSIASIFAW+RGL +RAKLDNN +LL F   LEA+C+  VE G MTKDLA+ + G    + R  YLNTEE+I+ VA  L ++L
Sbjct:  282 VAQGYGSLGLMTSVLLSAD--SLVAEASHGTVTRHFREHQKGRETSTNSIASIFAWTRGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEEYINKVAELLVSKL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.422e-36
Identity = 79/126 (62.70%), Postives = 95/126 (75.40%), Query Frame = -2
Query:  300 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEF-GKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLR 674
            +AQGFGSLGLMTS+L+ PDGKT E+EAAHGTVTRH+R HQ+G ETSTNSIASIFAW+R +  R KLDN   ++ F   LE A + TV+  GKMTKDLAL++   K  R  Y+ TEEFID VA  L+
Sbjct:  281 VAQGFGSLGLMTSILITPDGKTFESEAAHGTVTRHFRKHQRGEETSTNSIASIFAWTRAIIQRGKLDNTDDVIKFGNLLEKATLDTVQVGGKMTKDLALMLG--KTNRSSYVTTEEFIDEVAKRLQ 404          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDH2_CANTR (Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 82/129 (63.57%), Postives = 93/129 (72.09%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGK-MTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 674
            +AQGFGSLGLMTSVLV PDGK  E+EAAHGTVTRHYR HQ+G ETSTNSIASI+AW+RGL  R KLD+   ++ F E+LE A + TV     MTKDLAL     K  R  Y+ TEEFID VAN L   L
Sbjct:  283 VAQGFGSLGLMTSVLVTPDGKAFESEAAHGTVTRHYRQHQQGKETSTNSIASIYAWTRGLIQRGKLDDTPEVVKFAEELEKAVIETVSKDNIMTKDLALT--QGKTDRSSYVTTEEFIDGVANRLNKNL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 674
            +AQGFGSLGLMTSVL+ PDGKT+EAEAAHGTVTRHYR HQ+G  TSTN IASIFAW++GL+ R K D+   ++ F E LE  C+ TVE G MTKDLAL+I       + ++ TE+F +A+  +L A +
Sbjct:  279 VAQGFGSLGLMTSVLLSPDGKTVEAEAAHGTVTRHYRQHQQGKATSTNPIASIFAWTQGLSFRGKFDDTPDVVKFAETLEQVCIKTVEGGAMTKDLALLIG----PDQAWMTTEQFFEAIRVNLEAEM 402          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_DICDI (Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.590e-35
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = -2
Query:  312 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVA 674
            +AQG+GSLGLMTSVL   DG    +EA+HGTVTRH+R HQKG ETSTNS+ASIFAW+  L  R KLDNN  L+ F + +E ACV ++E G MTKDLA+ I G ++ R +YLNTEE+I+ VA
Sbjct:  302 VAQGYGSLGLMTSVLTNADG-VFASEASHGTVTRHFREHQKGNETSTNSVASIFAWTSALGQRGKLDNNKDLVKFAQDMEKACVESIESGFMTKDLAICIKGNQVKRSNYLNTEEYINKVA 421          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 81/129 (62.79%), Postives = 94/129 (72.87%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTV-EFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 674
            +AQGFGSLGLMTS+LV PDGKT E+EAAHGTVTRHYR +QKG ETSTNSIASIFAWSRGL  R +LDN   L  F   LE+A + TV + G MTKDLAL     +  R  Y+ TEEF+DAV   L+  +
Sbjct:  298 VAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNE--RSAYVTTEEFLDAVEKRLQKEI 424          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_SCHPO (Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe GN=idp1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.130e-33
Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 674
            +AQ +GSLGLMTSVL+ P+G+T E+EAAHGTV RHY  + KG +TSTNSIASIFAW+RGLAHR +LD N RL+ F   LE ACV  VE G MTKDL L+      +   Y++T EF+DAV ++L + L
Sbjct:  291 VAQAYGSLGLMTSVLIHPNGRTFESEAAHGTVQRHYMQYLKGKKTSTNSIASIFAWTRGLAHRGRLDGNERLVKFANALEHACVRCVEKGIMTKDLYLL----SKSPNGYVDTFEFLDAVKSELDSEL 414          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_ASPNG (Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 76/129 (58.91%), Postives = 91/129 (70.54%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTV-EFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 674
            +AQGFGSLGLMTS LV P G+  E+EAAHGTVTRHYR HQKG ETSTN IASIFAW+RGL  R KLD    ++ F E+LE AC+  V + G MTKDLAL     +  RE ++ T E++ AV   L+A L
Sbjct:  368 VAQGFGSLGLMTSTLVTPTGEAFESEAAHGTVTRHYREHQKGRETSTNPIASIFAWTRGLIQRGKLDETPDVVTFAEELERACIEVVNDEGIMTKDLALACG--RKEREAWVTTREYMAAVERRLKANL 494          
The following BLAST results are available for this feature:
BLAST of CN189597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_YEAST4.904e-3765.87Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDH1_CANTR8.364e-3765.08Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_DICDI2.434e-3662.31Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDHH_YEAST5.422e-3662.70Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]
IDH2_CANTR9.248e-3663.57Isocitrate dehydrogenase [NADP] peroxisomal OS=Can... [more]
IDH_SPHYA2.691e-3558.59Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]
IDHP_DICDI4.590e-3561.16Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_YEAST5.994e-3562.79Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_SCHPO1.130e-3358.59Probable isocitrate dehydrogenase [NADP], mitochon... [more]
IDHP_ASPNG9.570e-3358.91Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002B23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189597 ID=CN189597; Name=CN189597; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTAAAACCAGGGAACGTAAATTTNGGCAGCAATAG
TTTTTGTTTATAACAAGCCATGTTCAAAACATTTGCTTGCATGAAAATGA
AAGTTTGTCGATCAACAGGAAAGCAGTCTATTGTAGGAATTAAAAAAAAA
CCAAATCCCAATCCCCAATTTTCCCCTCTTCAATTATTTCTTCTCAGCAT
AATATGAAAAAAATAACCAAAGGAAGCTTCCCCAAGTCTTTACCTTTGAA
TGGGTAGCATCTGCAACAAAAAAAATCATGCTTTGCCAAAAAGTCTTGCT
CTTAAATCGTTGGCCACAGCATCAATGAACTCTTCAGTATTCAAATAGTG
TTCCCTAGTCATCTTAAATCCATGGATAATAAGTGCAAGATCCTTGGTCA
TCTTCCCAAATTCAACAGTGCCAACACATGCAGCTTCTAGTTTCTCAGTA
AAATCCAATAGCCTAGCATTGTTGTCCAACTTCGCCCTATGTGCAAGCCC
TCGTGACCAAGCAAAGATGGAGGCTATGCTGTTTGTGCTAGTTTCACCAC
CTTTCTGATGAACTCTGTAGTGTCGGGTGACTGTTCCATGGGCGGCTTCG
GCTTCAATTGTCTTCCCATCAGGGCATACCAGTACAGATGTCATCAATCC
AAGAGATCCAAACCCTTGAGCTAGGAAA
back to top